Different codes that I use for crunching, wrangling and analysing (and sometimes generating) different types of biological data.
The different folders guide to the specific languages the codes are written in.
Written mostly using R studio, traditionally I use mostly Tidyverse for the data wrangling and also loading
The objective of this code is to "compress" image analysis data into a more manageable table that makes it easier for plotting and representation. It 'tracks' cells based on their position across different focal points of a Z-stack image. The input data is a table of cell measurements obtained with the MicrobeJ plugin for FIJI. For this to be used, it is necessary to have at least measurements of cell length and width, as well as the x and y coordinates of the cell centroids.