Merge pull request #14 from Novartis/11-goettingen2024

Add Göttingen December 2024 course
Novartis · Jan 21, 2025 · e45067e · e45067e
2 parents 27f9dc7 + 9e25bff
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diff --git a/.gitignore b/.gitignore
@@ -36,3 +36,4 @@ videos
 *.mp4
 
 /.quarto/
+**/.DS_Store
diff --git a/index.qmd b/index.qmd
@@ -15,11 +15,14 @@ clinical questions that were addressed via Bayesian modelling with the `brms` pa
 
 ::: {.content-visible when-profile="public"}
 ::: {.callout-tip}
-## Short course at JSM -- Portland, OR -- August 5th 2024
+## Courses in Göttingen (Germany), Dec 5/6<sup>th</sup> and at JSM (Portland, OR), Aug 5<sup>th</sup> 2024
 
-We will offer a short course based on this material at the 2024 Joint Statistical Meetings in Portland on August 5. The materials are available here:
+We offered two courses based on this material in 2024:
 
-- [Slides](workshops/jsm2024/slides/bamdd_jsm2024.pdf) & [additional material (see readme)](https://github.com/Novartis/bamdd/tree/main/workshops/jsm2024)
+1. A course at the workshop ["Hierarchical models in preclinical research"](https://www.biometrische-gesellschaft.de/arbeitsgruppen/bayes-methodik/workshops/2024-goettingen.html) of the IBS-DR working groups Non-clinical statistics and Bayes Methods on December 5/6<sup>th</sup>. The materials are available here:
+   [Slides](workshops/goettingen2024/slides/bamdd_goettingen2024.html) & [additional material (see readme)](https://github.com/Novartis/bamdd/tree/main/workshops/goettingen2024)
+2. A short course at the 2024 Joint Statistical Meetings in Portland on August 5<sup>th</sup>. The materials are available here:
+   [Slides](workshops/jsm2024/slides/bamdd_jsm2024.pdf) & [additional material (see readme)](https://github.com/Novartis/bamdd/tree/main/workshops/jsm2024)
 
 :::
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@@ -46,6 +49,8 @@ appropiate. Key changes to the web-site are tracked here:
 
 
 ::: {.content-visible when-profile="public"}
+- 13th January 2025: Linked materials from the course in Göttingen 
+  in December 2024.
 - 31st July 2024: Linked materials from JSM Portland 2024 short course
 - 5th June 2024: Added @sec-pos on assessing probability of success of
   in Phase-III based on a single-arm trial in Phase-II

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diff --git a/src/longitudinal/fit_models.R b/src/longitudinal/fit_models.R
@@ -126,7 +126,7 @@ emm <- clustermq::Q_rows(
     walltime = 120,
     job_name = "longitudinal_child",
     log_file = here("reports", "longitudinal_child_%I.log"),
-    memory = 3000,
+    memory = 8000,
     cores = 4
   ),
   job_size = 1

diff --git a/src/move_videos.R b/src/move_videos.R
diff --git a/src/plot_distributions.R b/src/plot_distributions.R
diff --git a/src/preamble.tex b/src/preamble.tex
diff --git a/workshops/goettingen2024/README.md b/workshops/goettingen2024/README.md
@@ -0,0 +1,24 @@
+# Course materials 
+
+These are the materials accompanying the tutorial for the Workshop of the IBS-DR working groups "Non-clinical statistics" and "Bayes Methods" on "Hierarchical models in preclinical research" in Göttingen, Germany, on December 5th and 6th, 2024. 
+
+Instructors:
+- Sebastian Weber
+- Lukas Widmer
+
+Additional contributors:
+- Andrew Bean
+- Paul Buerkner
+- Bjoern Holzhauer
+- David Ohlssen
+- Cong Zhang
+
+
+## Folder structure
+
+- `slides/bamdd_goettingen2024.html` is the main slide deck for the course
+- `slides/R/` is a directory containing the R code from the case studies presented in the course
+- `exercises/` contains two sets of hands-on exercises and solutions in the form of Quarto and corresponding R code files
+
+
+
diff --git a/workshops/goettingen2024/brms_course.Rproj b/workshops/goettingen2024/brms_course.Rproj
@@ -0,0 +1,13 @@
+Version: 1.0
+
+RestoreWorkspace: Default
+SaveWorkspace: Default
+AlwaysSaveHistory: Default
+
+EnableCodeIndexing: Yes
+UseSpacesForTab: Yes
+NumSpacesForTab: 2
+Encoding: UTF-8
+
+RnwWeave: Sweave
+LaTeX: pdfLaTeX