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andrew-bean committed Jul 31, 2024
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189 changes: 189 additions & 0 deletions bamdd.css
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64 changes: 38 additions & 26 deletions index.html
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Expand Up @@ -2,15 +2,15 @@
<html xmlns="http://www.w3.org/1999/xhtml" lang="en" xml:lang="en"><head>

<meta charset="utf-8">
<meta name="generator" content="quarto-1.4.555">
<meta name="generator" content="quarto-1.5.55">

<meta name="viewport" content="width=device-width, initial-scale=1.0, user-scalable=yes">

<meta name="author" content="Sebastian Weber - [email protected]">
<meta name="author" content="Björn Holzhauer - [email protected]">
<meta name="author" content="Lukas Widmer - [email protected]">
<meta name="author" content="Andrew Bean - [email protected]">
<meta name="dcterms.date" content="2024-06-05">
<meta name="dcterms.date" content="2024-07-31">

<title>Applied Modelling in Drug Development</title>
<style>
Expand Down Expand Up @@ -38,7 +38,7 @@
}
@media print {
pre > code.sourceCode { white-space: pre-wrap; }
pre > code.sourceCode > span { text-indent: -5em; padding-left: 5em; }
pre > code.sourceCode > span { display: inline-block; text-indent: -5em; padding-left: 5em; }
}
pre.numberSource code
{ counter-reset: source-line 0; }
Expand Down Expand Up @@ -108,6 +108,7 @@
}</script>


<link rel="stylesheet" href="bamdd.css">
</head>

<body class="nav-sidebar floating">
Expand All @@ -116,13 +117,13 @@
<header id="quarto-header" class="headroom fixed-top">
<nav class="quarto-secondary-nav">
<div class="container-fluid d-flex">
<button type="button" class="quarto-btn-toggle btn" data-bs-toggle="collapse" data-bs-target=".quarto-sidebar-collapse-item" aria-controls="quarto-sidebar" aria-expanded="false" aria-label="Toggle sidebar navigation" onclick="if (window.quartoToggleHeadroom) { window.quartoToggleHeadroom(); }">
<button type="button" class="quarto-btn-toggle btn" data-bs-toggle="collapse" role="button" data-bs-target=".quarto-sidebar-collapse-item" aria-controls="quarto-sidebar" aria-expanded="false" aria-label="Toggle sidebar navigation" onclick="if (window.quartoToggleHeadroom) { window.quartoToggleHeadroom(); }">
<i class="bi bi-layout-text-sidebar-reverse"></i>
</button>
<nav class="quarto-page-breadcrumbs" aria-label="breadcrumb"><ol class="breadcrumb"><li class="breadcrumb-item"><a href="./index.html">Preface</a></li></ol></nav>
<a class="flex-grow-1" role="button" data-bs-toggle="collapse" data-bs-target=".quarto-sidebar-collapse-item" aria-controls="quarto-sidebar" aria-expanded="false" aria-label="Toggle sidebar navigation" onclick="if (window.quartoToggleHeadroom) { window.quartoToggleHeadroom(); }">
<a class="flex-grow-1" role="navigation" data-bs-toggle="collapse" data-bs-target=".quarto-sidebar-collapse-item" aria-controls="quarto-sidebar" aria-expanded="false" aria-label="Toggle sidebar navigation" onclick="if (window.quartoToggleHeadroom) { window.quartoToggleHeadroom(); }">
</a>
<button type="button" class="btn quarto-search-button" aria-label="" onclick="window.quartoOpenSearch();">
<button type="button" class="btn quarto-search-button" aria-label="Search" onclick="window.quartoOpenSearch();">
<i class="bi bi-search"></i>
</button>
</div>
Expand Down Expand Up @@ -158,9 +159,9 @@
</li>
<li class="sidebar-item sidebar-item-section">
<div class="sidebar-item-container">
<a class="sidebar-item-text sidebar-link text-start" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-1" aria-expanded="true">
<a class="sidebar-item-text sidebar-link text-start" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-1" role="navigation" aria-expanded="true">
<span class="menu-text">Getting started</span></a>
<a class="sidebar-item-toggle text-start" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-1" aria-expanded="true" aria-label="Toggle section">
<a class="sidebar-item-toggle text-start" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-1" role="navigation" aria-expanded="true" aria-label="Toggle section">
<i class="bi bi-chevron-right ms-2"></i>
</a>
</div>
Expand Down Expand Up @@ -189,7 +190,7 @@
<div class="sidebar-item-container">
<a href="./src/02_case_studies.html" class="sidebar-item-text sidebar-link">
<span class="menu-text">Case studies</span></a>
<a class="sidebar-item-toggle text-start" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-2" aria-expanded="true" aria-label="Toggle section">
<a class="sidebar-item-toggle text-start" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-2" role="navigation" aria-expanded="true" aria-label="Toggle section">
<i class="bi bi-chevron-right ms-2"></i>
</a>
</div>
Expand Down Expand Up @@ -270,9 +271,9 @@
</li>
<li class="sidebar-item sidebar-item-section">
<div class="sidebar-item-container">
<a class="sidebar-item-text sidebar-link text-start" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-3" aria-expanded="true">
<a class="sidebar-item-text sidebar-link text-start" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-3" role="navigation" aria-expanded="true">
<span class="menu-text">Advanced topics</span></a>
<a class="sidebar-item-toggle text-start" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-3" aria-expanded="true" aria-label="Toggle section">
<a class="sidebar-item-toggle text-start" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-3" role="navigation" aria-expanded="true" aria-label="Toggle section">
<i class="bi bi-chevron-right ms-2"></i>
</a>
</div>
Expand Down Expand Up @@ -336,7 +337,7 @@ <h2 id="toc-title">Table of contents</h2>
<div>
<div class="quarto-title-meta-heading">Published</div>
<div class="quarto-title-meta-contents">
<p class="date">June 5, 2024</p>
<p class="date">July 31, 2024</p>
</div>
</div>

Expand Down Expand Up @@ -422,18 +423,7 @@ <h2 class="anchored" data-anchor-id="license-information">License information</h
}
return false;
}
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return codeEl.innerText;
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clipboard.on('success', function(e) {
const onCopySuccess = function(e) {
// button target
const button = e.trigger;
// don't keep focus
Expand Down Expand Up @@ -465,7 +455,29 @@ <h2 class="anchored" data-anchor-id="license-information">License information</h
}, 1000);
// clear code selection
e.clearSelection();
}
const getTextToCopy = function(trigger) {
const codeEl = trigger.previousElementSibling.cloneNode(true);
for (const childEl of codeEl.children) {
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}
}
return codeEl.innerText;
}
const clipboard = new window.ClipboardJS('.code-copy-button:not([data-in-quarto-modal])', {
text: getTextToCopy
});
clipboard.on('success', onCopySuccess);
if (window.document.getElementById('quarto-embedded-source-code-modal')) {
// For code content inside modals, clipBoardJS needs to be initialized with a container option
// TODO: Check when it could be a function (https://github.com/zenorocha/clipboard.js/issues/860)
const clipboardModal = new window.ClipboardJS('.code-copy-button[data-in-quarto-modal]', {
text: getTextToCopy,
container: window.document.getElementById('quarto-embedded-source-code-modal')
});
clipboardModal.on('success', onCopySuccess);
}
const viewSource = window.document.getElementById('quarto-view-source') ||
window.document.getElementById('quarto-code-tools-source');
if (viewSource) {
Expand Down Expand Up @@ -524,7 +536,7 @@ <h2 class="anchored" data-anchor-id="license-information">License information</h
return filterRegex.test(href) || localhostRegex.test(href) || mailtoRegex.test(href);
}
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var links = window.document.querySelectorAll('a[href]:not(.nav-link):not(.navbar-brand):not(.toc-action):not(.sidebar-link):not(.sidebar-item-toggle):not(.pagination-link):not(.no-external):not([aria-hidden]):not(.dropdown-item):not(.quarto-navigation-tool)');
var links = window.document.querySelectorAll('a[href]:not(.nav-link):not(.navbar-brand):not(.toc-action):not(.sidebar-link):not(.sidebar-item-toggle):not(.pagination-link):not(.no-external):not([aria-hidden]):not(.dropdown-item):not(.quarto-navigation-tool):not(.about-link)');
for (var i=0; i<links.length; i++) {
const link = links[i];
if (!isInternal(link.href)) {
Expand Down Expand Up @@ -914,7 +926,7 @@ <h2 class="anchored" data-anchor-id="license-information">License information</h
<span id="cb1-56"><a href="#cb1-56" aria-hidden="true" tabindex="-1"></a><span class="ss">- </span>The material on this website is provided under a CC BY 4.0 <span class="co">[</span><span class="ot">license</span><span class="co">](https://github.com/Novartis/bamdd/tree/main/docs/public/LICENSE)</span></span>
<span id="cb1-57"><a href="#cb1-57" aria-hidden="true" tabindex="-1"></a><span class="ss">- </span>The source code is provided under a GPL-2 <span class="co">[</span><span class="ot">license</span><span class="co">](https://github.com/Novartis/bamdd/tree/main/LICENSE)</span></span>
<span id="cb1-58"><a href="#cb1-58" aria-hidden="true" tabindex="-1"></a>:::</span>
<span id="cb1-59"><a href="#cb1-59" aria-hidden="true" tabindex="-1"></a></span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
<span id="cb1-59"><a href="#cb1-59" aria-hidden="true" tabindex="-1"></a></span></code><button title="Copy to Clipboard" class="code-copy-button" data-in-quarto-modal=""><i class="bi"></i></button></pre></div>
</div></div></div></div></div>
</div> <!-- /content -->

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