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Thu Nov 7 18:04:01 UTC 2024 (#7710)
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Co-authored-by: Workflows.Backup <[email protected]>
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github-actions[bot] and Workflows.Backup authored Nov 7, 2024
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2 changes: 1 addition & 1 deletion NHSEnglandFHIRGenomicsImplementationGuide/README.md
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Expand Up @@ -5,4 +5,4 @@ It was created on 29/09/2023 and has been set up to run every 1 month.

## Last Updated

Updated at: Wed Nov 6 18:04:01 UTC 2024
Updated at: Thu Nov 7 18:04:10 UTC 2024
51 changes: 11 additions & 40 deletions ...ntation-Guide/Home/FHIRAssets/Profiles/All-Profiles/Genomics-AuditEvent.page.md
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---


## {{variable:issue}}
# {{variable:issue}}

Created by the central GMS infrastructure on any CRUD event.

Expand All @@ -27,42 +27,6 @@ The below profile is therefore provided to support parsing for clients if return

{{page:Home-FHIRAssets-Profiles-All-Profiles-BaseProfilesTemplatePage}}

<!--
<div class="nhsd-!t-margin-bottom-6">
<ul class="nav nav-tabs" role="tablist">
<li role="presentation" class="active">
<a href="#Profile" role="tab" data-toggle="tab">Profile</a>
</li>
<li role="presentation">
<a href="#Differential" role="tab" data-toggle="tab">Differential</a>
</li>
<li role="presentation">
<a href="#Constraints" role="tab" data-toggle="tab">Constraints</a>
</li>
<li role="presentation">
<a href="#Examples" role="tab" data-toggle="tab">Examples</a>
</li>
<li role="presentation">
<a href="#Mappings" role="tab" data-toggle="tab">Mappings</a>
</li>
</ul>
<div class="tab-content snippet">
<div id="Profile" role="tabpanel" class="tab-pane active">
<br />
{{tree:http://hl7.org/fhir/StructureDefinition/AuditEvent, snapshot}}
</div>
<div id="Differential" role="tabpanel" class="tab-pane">
<br />
Differential from {{link:http://hl7.org/fhir/StructureDefinition/AuditEvent}} <br>
<br />
{{tree:http://hl7.org/fhir/StructureDefinition/AuditEvent, diff}}
</div>
<div id="Dictionary" role="tabpanel" class="tab-pane">
<br />
{{dict:http://hl7.org/fhir/StructureDefinition/AuditEvent, hybrid}}
</div>
-->
<div id="Examples" class="tabcontent">
<br />
Expand All @@ -73,11 +37,13 @@ The below profile is therefore provided to support parsing for clients if return
</div>

<div id="Mappings" class="tabcontent">
<!--
<br>
<table class="assets">
<tr><th>FHIR</th><th>MDS</th><th>HL7v2</th></tr>
<tr><td></td><td></td><td></td></tr>
</table>
-->
</div>

---
Expand All @@ -91,15 +57,17 @@ The below profile is therefore provided to support parsing for clients if return
- <a href="#entity">entity</a>

<a name="action"></a>
#### action
<h4 class='additional-Guidance-Submenu'> action </h4>
SHALL be present. Code from base HL7 resource, only C (create), R (read) and U (update) would usually be expected.

```json
"action": "U",
```

<a name="agent"></a>
#### agent
<h4 class='additional-Guidance-Submenu'> agent </h4>
SHOULD be present for any user initiated actions. Reference to the user or system that triggered the creation/read/update. Identity SHOULD be determined through the appropriate authentication token within the request header, e.g. CIS2 auth token.

```json
"agent": [
{
Expand All @@ -126,8 +94,9 @@ SHOULD be present for any user initiated actions. Reference to the user or syste
```

<a name="entity"></a>
#### entity
<h4 class='additional-Guidance-Submenu'> entity </h4>
SHOULD be present where the resource exists on the server. Reference to the resource which was affected by the event.

```json
"entity": [
{
Expand All @@ -146,4 +115,6 @@ SHOULD be present where the resource exists on the server. Reference to the reso
}
}
]
```

---
80 changes: 3 additions & 77 deletions ...tion-Guide/Home/FHIRAssets/Profiles/All-Profiles/Genomics-BodyStructure.page.md
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@@ -1,12 +1,12 @@
---
topic: Profile-Genomics-AuditEvent
topic: Profile-Genomics-BodyStructure
issue: Genomics-BodyStructure
subject: http://hl7.org/fhir/StructureDefinition/BodyStructure
expand: yes
---


## {{variable:issue}}
# {{variable:issue}}

The Genomics BodyStructure is currently based on the HL7 international version of the resource as a profile for BodyStructure does not exist in UKCore. Once this profile becomes active in UKCore its suitability for use and need for profiling within Genomics will be assessed.

Expand Down Expand Up @@ -45,78 +45,4 @@ Use of this resource is meant to replace the Genomics extensions for topology an
</table>
</div>

---
<!--
<div class="nhsd-!t-margin-bottom-6">
<ul class="nav nav-tabs" role="tablist">
<li role="presentation" class="active">
<a href="#Profile" role="tab" data-toggle="tab">Profile</a>
</li>
<li role="presentation">
<a href="#Differential" role="tab" data-toggle="tab">Differential</a>
</li>
<li role="presentation">
<a href="#Constraints" role="tab" data-toggle="tab">Constraints</a>
</li>
<li role="presentation">
<a href="#Examples" role="tab" data-toggle="tab">Examples</a>
</li>
<li role="presentation">
<a href="#Mappings" role="tab" data-toggle="tab">Mappings</a>
</li>
</ul>
<div class="tab-content snippet">
<div id="Profile" role="tabpanel" class="tab-pane active">
<br />
{{tree: http://hl7.org/fhir/StructureDefinition/BodyStructure, snapshot}}
</div>
<div id="Differential" role="tabpanel" class="tab-pane">
<br />
Differential from {{link:http://hl7.org/fhir/StructureDefinition/BodyStructure}} <br>
<br />
{{tree:http://hl7.org/fhir/StructureDefinition/BodyStructure, diff}}
</div>
<div id="Dictionary" role="tabpanel" class="tab-pane">
<br />
{{dict:http://hl7.org/fhir/StructureDefinition/BodyStructure, hybrid}}
</div>
<div id="Examples" role="tabpanel" class="tab-pane">
<br />
<table>
<tr>
<td>
{{pagelink:BodyStructure-PancreaticTumour}}
</td>
</tr>
<tr>
<td>
{{pagelink:BodyStructure-BodySiteLocationLungs-Example}}
</td>
</tr>
<tr>
<td>
{{pagelink:BodyStructure-SpecimenBodySiteLocation-Example}}
</td>
</tr>
</table>
</div>
<div id="Constraints" role="tabpanel" class="tab-pane">
<br />
@```
from StructureDefinition
where url=':http://hl7.org/fhir/StructureDefinition/BodyStructure'
for differential.element.constraint
select key, human, severity, expression
```
</div>
<div id="Mappings" role="tabpanel" class="tab-pane">
<br />
<table class="assets">
<tr><th>FHIR</th><th>MDS</th><th>HL7v2</th></tr>
<tr><td>BodyStructure.morphology</td><td>Primary Sample - Solid tumour morphology</td><td>Additional SPM-4/5 qualifiers</td></tr>
<tr><td>BodyStructure.location</td><td>Primary Sample - Solid tumour histological type (topography)</td><td>SPM-8</td></tr>
</table>
</div>
</div>
</div>
-->
---
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