Merge pull request #138 from Noam-Elisha/master

Added Dockerfile to build WE-UQ Image

DockerfileWE

@@ -0,0 +1,199 @@
+FROM ubuntu:bionic
+
+SHELL ["/bin/bash", "-c"]
+
+ARG versionWEUQ=xxxxxx
+ARG versionSimCenterCommon=v23.09
+ARG versionSimCenterBackend=v23.09
+ARG versionOpenSees=v3.5.0
+
+WORKDIR /simcenter
+
+#
+# Install Qt
+#   note: utilizes following for Qt: https://launchpad.net/~beineri/+archive/ubuntu/opt-qt-5.15.2-bionic
+# 
+
+RUN apt-get update \
+    && apt-get install -y sudo \
+    && sudo apt install -y software-properties-common cmake \
+    && sudo add-apt-repository -y  ppa:beineri/opt-qt-5.15.2-bionic \
+    && sudo apt update \
+    && sudo apt-get install -y build-essential freeglut3-dev python3-pip git \
+    && sudo python3 -m pip install -U pip \
+    && pip3 install conan==1.60.1 \
+    && sudo apt-get install -y qt515base qt5153d qt515charts-no-lgpl qt515webengine
+
+#
+# Install cmake needed for VTK
+#
+
+RUN sudo apt remove cmake -y \
+    && sudo apt purge --auto-remove cmake -y \
+    && sudo apt-get install -y wget \
+    && wget http://www.cmake.org/files/v3.15/cmake-3.15.0.tar.gz \
+    && tar xf cmake-3.15.0.tar.gz \
+    && cd cmake-3.15.0 \
+    && ./configure \
+    && make \
+    && sudo make install \
+    && rm -fr /simcenter/cmake*
+
+#
+# Install VTK needed for WE-UQ frontend
+#
+
+RUN wget https://www.vtk.org/files/release/9.2/VTK-9.2.6.tar.gz \
+    && tar -zxBf VTK-9.2.6.tar.gz \
+    && cd VTK-9.2.6; mkdir build; cd build \
+    && source /opt/qt515/bin/qt515-env.sh \
+    && cmake .. \
+    -DCMAKE_BUILD_TYPE=Release \
+    -DCMAKE_INSTALL_PREFIX=/usr/local \
+    -DBUILD_SHARED_LIBS:BOOL=ON \
+    -DVTK_GROUP_ENABLE_Qt=YES -DVTK_VTK_Group_Qt=YES \
+    -DVTK_MODULE_ENABLE_VTK_GUISupportQt=YES \
+    -DQt5_DIR:PATH=/usr/local/qt/lib/cmake/Qt5 \
+    && make \
+    && sudo make install \
+    && rm -fr /simcenter/VTK*
+
+#
+# Build WE-UQ frontend
+#     && git clone -b $versionEE --single-branch https://github.com/NHERI-SimCenter/WE-UQ.git \
+
+RUN  source /opt/qt515/bin/qt515-env.sh \
+    && git clone https://github.com/NHERI-SimCenter/SimCenterCommon.git \
+    && git clone https://github.com/NHERI-SimCenter/WE-UQ.git \
+    && cd WE-UQ \
+    && mkdir build \
+    && cd build \
+    && conan install .. --build missing \
+    && source /opt/qt515/bin/qt515-env.sh \    
+    && qmake ../WE-UQ.pro \
+    && make \
+    && rm -fr .obj *.o *.cpp \
+    && rm -fr /simcenter/SimCenterCommon
+
+
+#
+# Install openfoam - version 10
+#  NOTE: missing adding source /opt/openfoam10/etc/bashrc into bashrc
+#       ===> will add to application
+#
+
+RUN  sudo sh -c "wget -O - https://dl.openfoam.org/gpg.key > /etc/apt/trusted.gpg.d/openfoam.asc" \
+     && sudo add-apt-repository http://dl.openfoam.org/ubuntu \
+     && sudo apt-get update \
+     && sudo apt-get -y install openfoam10 
+
+#
+# Build OpenSees
+#   note: some stuff in there to get latest cmake as 3.10 not doing it
+#
+
+RUN sudo apt-get install -y cmake liblapack-dev libomp-dev libssl-dev apt-transport-https ca-certificates wget \        
+    && wget -O - https://apt.kitware.com/keys/kitware-archive-latest.asc 2>/dev/null | gpg --dearmor - | sudo tee /etc/apt/trusted.gpg.d/kitware.gpg >/dev/null \
+    && sudo apt-add-repository "deb https://apt.kitware.com/ubuntu/ $(lsb_release -cs) main" \
+    && sudo apt-get update \
+    && sudo apt-get install -y cmake gfortran gcc g++ \
+    && git clone -b $versionOpenSees --single-branch https://github.com/OpenSees/OpenSees.git \
+    && cd OpenSees \
+    && mkdir build; cd build \
+    && conan install .. --build missing \
+    && cmake .. \
+    && cmake --build . --config Release \
+    && cmake --install . \
+    && sudo mv ./lib/* /usr/local/lib \
+    && cd ../..; rm -fr OpenSees
+
+#
+# Build Dakota
+#    note: dakota also needed more upto date cmake
+
+RUN wget https://github.com/snl-dakota/dakota/releases/download/v6.15.0/dakota-6.15.0-public-src-cli.tar.gz \
+    && sudo apt-get install -y libboost-dev libboost-all-dev libopenmpi-dev openmpi-bin xorg-dev libmotif-dev \
+    && tar zxBf dakota-6.15.0-public-src-cli.tar.gz \
+    && mv dakota-6.15.0-public-src-cli dakota-6.15.0 \
+    && cd dakota-6.15.0 \
+    && mkdir build; cd build \
+    && cmake .. \
+    && cmake --build . --config Release \
+    && cmake --install . \
+    && cd ../..; rm -fr dakot*    
+
+
+#
+# Build SimCenter Backend Applications
+#    note: need newer gcc, gcc-10 which necessitates removing old conan 
+#
+
+RUN git clone -b $versionSimCenterBackend https://github.com/NHERI-SimCenter/SimCenterBackendApplications.git \
+    && cp ./SimCenterBackendApplications/modules/performUQ/SimCenterUQ/nataf_gsa/CMakeLists.txt.UBUNTU ./SimCenterBackendApplications/modules/performUQ/SimCenterUQ/nataf_gsa/CMakeLists.txt \
+    && rm -fr ~/.conan \
+    && sudo apt-get install -y liblapack-dev libomp-dev libssl-dev apt-transport-https ca-certificates \        
+    && sudo add-apt-repository -y ppa:ubuntu-toolchain-r/test \
+    && sudo apt-get update \
+    && sudo apt-get install -y gcc-10 g++-10 gfortran-10 \
+    && export CC=gcc-10 \
+    && export CXX=g++-10 \
+    && export FC=gfortran-10 \    
+    && conan remote add simcenter https://nherisimcenter.jfrog.io/artifactory/api/conan/simcenter \
+    && cd SimCenterBackendApplications \
+    && mkdir build \
+    && cd build \
+    && conan install .. --build missing \
+    && cmake .. \
+    && cmake --build . --config Release \
+    && cmake --install . \
+    && cd ../..
+
+#
+# Install python3.9
+#  note: need a later python3 for nheri-simcenter
+#         which we have to build from source!!!
+#
+
+RUN sudo apt-get install -y zlib1g-dev libncurses5-dev libgdbm-dev libnss3-dev libreadline-dev libffi-dev libbz2-dev \
+    && wget https://www.python.org/ftp/python/3.9.6/Python-3.9.6.tgz \
+    && tar -xf Python-3.9.6.tgz \
+    && cd Python-3.9.6 \
+    && ./configure --enable-optimizations \
+    && sudo make install \
+    && cd ..; rm -fr python* \
+    && pip3 install nheri-simcenter
+
+#
+# Copy all files into correct locations for running & clean up
+#
+
+RUN cd WE-UQ/build \
+    && cp -r ../Examples ./ \
+    && cp -r ../../SimCenterBackendApplications/applications . \
+    && rm -fr /simcenter/SimCenterBackendApplications \
+    && rm -fr /simcenter/SimCenterCommon
+
+#
+# add following for the missing lib libQt5Core.so error that is related to running on some versions linux
+# with an older kernel, seemingly need kernel >= 3.5 on host .. soln from Sal T. found in an AskUbuntu thread
+#
+
+RUN strip --remove-section=.note.ABI-tag /opt/qt515/lib/libQt5Core.so.5
+
+#
+# Finally add a new user simcenter as root cannot run the Qt app
+#
+
+RUN useradd -ms /bin/bash simcenter
+
+USER simcenter
+
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