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Masifor240402#313

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Commits on Jan 4, 2024

• update URLs again

  

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• Merge pull request #253 from NCI-GDC/fix_bam_slice_images_again

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• fix png url

  

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• Merge pull request #254 from NCI-GDC/fix_png_name

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Commits on Jan 8, 2024

• DOC-353 adds info about primary sites table

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• removes unnecessary periods at end of bullets

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• more unnecessary periods removed

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• replaces screenshot that had unusual keyboard focus outline

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• first draft - v2 release notes for users

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• Added page build YAML info for release notes

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• DOC-320 adds link that explains what annotations are

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• DOC-396 adds info about access, login

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Commits on Jan 9, 2024

• DOC-366 adds information about Save As

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• Changed name

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• fixes typo, adds known issues

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• Merge pull request #257 from NCI-GDC/vtname

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• link update for v2

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• link update for v2

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• V2 link update

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• update for v2

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• adjusts links

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• DOC-400 updates home page image and case summary image

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Commits on Jan 10, 2024

• fixes paths for links

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• adds known issue about gene expression card and displayed counts

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• Merge pull request #256 from NCI-GDC/release_notes_user_v2

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• Merge pull request #255 from NCI-GDC/wendy_jan_8_misc_updates

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• Changed V1 to v1.0

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• Added 1.0 to old data portal Getting_Started page

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• V2 updates

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• v2 link updates

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• v2 updates

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• remove extra chars in front of table formatting

  

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• Merge pull request #259 from NCI-GDC/fix_Data_pdf

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• v2 wording updates

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• test link fix

  

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• Merge pull request #260 from NCI-GDC/debug_links_dev_site

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Commits on Jan 11, 2024

• test link fix

  

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• Merge pull request #261 from NCI-GDC/debug_links_dev_site2

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• V2 updates - Move Survival Plot info over

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• fix broken links

  

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• Merge pull request #262 from NCI-GDC/debug_links_dev_site3

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• fix another linl

  

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• Merge pull request #263 from NCI-GDC/debug_links_dev_site4

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Commits on Jan 17, 2024

• Auth_info updated for v2

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Commits on Jan 18, 2024

• updated spelling error and v2 updated wording

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• image file updates

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Commits on Jan 19, 2024

• Merge pull request #258 from NCI-GDC/portal-1-0

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• video tutorial modifications

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• Added developers guide

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• Fixed list format

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• DOC-344 replaces old analysis center images in Sequence Reads and PP

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Commits on Jan 20, 2024

• DOC-397 removes MAF aggregation refs

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Commits on Jan 22, 2024

• Merge pull request #264 from NCI-GDC/v2-ianm

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• Merge pull request #267 from NCI-GDC/rn_fix

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• adds lines to get bullets to render

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• more empty lines for bullets

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• Merge pull request #266 from NCI-GDC/dev_guide

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• Merge pull request #265 from NCI-GDC/video_page_changes

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• DOC-309 years-days conversion info

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• DOC-404 add info about header checkbox

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• Merge pull request #268 from NCI-GDC/wendy_jan_19_updates

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Commits on Jan 23, 2024

• adds more blank lines to render bullets correctly

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Commits on Jan 24, 2024

• Code block rendering issue

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• Added dev guide images

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• Merge pull request #270 from NCI-GDC/dev-page-fix

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• Removed a space

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• Merge pull request #271 from NCI-GDC/dev-fix-2

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• release notes known issues

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• Remaining component images

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• Merge pull request #272 from NCI-GDC/dev-fix-2

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• dev guide image fix

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• Merge pull request #273 from NCI-GDC/dev-fix-2

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• fixed tab list

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• Merge pull request #274 from NCI-GDC/dev-fix-2

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• application card image

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• Removed ToC and some redundant info

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• Merge pull request #275 from NCI-GDC/dev-fix-2

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• fix link to user's guide

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• First Batch of new youtube links

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• Merge pull request #276 from NCI-GDC/youtube_links

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Commits on Jan 25, 2024

• Merge pull request #269 from NCI-GDC/wendy_release_notes_and_misc_updates

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• more known issues, esp st jude 508s

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• fixed image

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• New youtube links

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• adjust accessibility info

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• random developer guide fixes

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• Merge pull request #278 from NCI-GDC/dev-guide-3

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• Merge pull request #279 from NCI-GDC/20ify

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• Add Gene Expression Clustering Tool page

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• Table view caveat.

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Commits on Jan 26, 2024

• more edits to known issues

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• adds more known issues, reorganize

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• fixes typo

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• Adding references to gene_expression_clustering.md

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• adjusts new features text, adds SJ's known issues

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• more edits

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• Added OncoMatrix quick start page

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• Fixing image links

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• Fixing first STJ image link

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• update the oncomatrix docs and add gene expression docs

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Commits on Jan 29, 2024

• Merge branch 'develop-v2' into add_GEC_quick_start

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• Merge pull request #280 from NCI-GDC/add_GEC_quick_start

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• Merge pull request #282 from NCI-GDC/user-guides-oncomatrix-hierclust

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• Added four gifs

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• agif test

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• Merge pull request #283 from NCI-GDC/agif-test

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• encoding errors

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• Merge pull request #284 from NCI-GDC/agif-test

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• more encoding

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• even more encoding

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• Merge pull request #285 from NCI-GDC/agif-test

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Commits on Jan 30, 2024

• Merge pull request #277 from NCI-GDC/wendy_release_notes_jan_24

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• Merge branch 'develop-v2' into table-view

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• Merge pull request #281 from NCI-GDC/table-view

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• fixed encoding error

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• Merge pull request #286 from NCI-GDC/encoding

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• Converted to quicker-start page

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• Moved quickstart guide to getting started section

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• lines for getting-started page

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• Merge pull request #287 from NCI-GDC/qqstart

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Commits on Jan 31, 2024

• Quick reference guides for PP tools

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Commits on Feb 1, 2024

• Quick start - downloading files

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Commits on Feb 2, 2024

• Fixing links and doc format

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• Updating search bar documentation

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• Incorporating Bill's changes

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• Corrections from Charlotte/Wendy

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• Merge pull request #289 from NCI-GDC/qqstart

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• Merge pull request #288 from NCI-GDC/proteinpaint_quick_references

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• getting started random fixes

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• Cohort builder random fixes

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• Cohort comparison random fixes

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• Adding how to view mutations to Quick Start

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• Undoing accidental changes

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• Analysis center random fixes, reducing redundancy in getting started

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• update_quick_start

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• random fixes - repository

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• random fixes - projects

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• release notes updates

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• removed stray text

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• removes extra lines

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Commits on Feb 5, 2024

• improves phrasing

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• updates known issue

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• Fixing GIFs

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• Merge pull request #290 from NCI-GDC/update_quick_start_cs

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• fixed typos

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• added back period

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• Changed Page order on doc site

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• relearned alphabet

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• Merge pull request #293 from NCI-GDC/menu

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Commits on Feb 6, 2024

• tutorial video page - formatting changes

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• no more table 1

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• changed link

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• added tables to QS

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• Merge pull request #294 from NCI-GDC/vid-tut-format

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• Combined full and quick ref guide

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• added .

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• Merge pull request #291 from NCI-GDC/fixes-misc

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• Converting to HTML

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• Merge pull request #295 from NCI-GDC/convert_to_html

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• Revert "Converting to HTML"

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• Merge pull request #296 from NCI-GDC/revert-295-convert_to_html

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• Proteinpaint QS append

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• mkdown table

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• Merge pull request #297 from NCI-GDC/video-tables

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• updates release notes; trying new styling

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Commits on Feb 7, 2024

• DOC-269 adds info about p-value

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• clarify body plot

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• Few wording changes

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• Added lollipop QREF guide

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• Added QREF to oncomatrix

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• onco QREF

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• fixed based on DOC-410

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• Link updates - Manifest file move to API

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• Manifest Move link update git to API

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• Updated ProteinPaint sequence reads documentation

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• add DR40 file manifests

  

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