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@@ -143,7 +143,7 @@ <h2 class="anchored" data-anchor-id="tools-for-reproducible-research"><span clas
 <p>How to work reproducibly with control and structuring of project code, environment and workflow management</p>
 <hr>
 <div class="small">
-<p>Updated: 04-10-2024 at 18:50:24 .</p>
+<p>Updated: 10-10-2024 at 09:14:09 .</p>
 </div>
 </section>
 </div>

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-    "text": "How to work reproducibly with control and structuring of project code, environment and workflow management\n\n\nUpdated: 04-10-2024 at 18:50:24 ."
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-    "text": "How to work reproducibly with control and structuring of project code, environment and workflow management\n\n\nUpdated: 04-10-2024 at 18:50:24 ."
+    "text": "How to work reproducibly with control and structuring of project code, environment and workflow management\n\n\nUpdated: 10-10-2024 at 09:14:09 ."
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-    "text": "Time\nTopic\nInstructor\n\n\n \n25-Nov-2024MonStockholm\n\n09:00 - NA\nSetting up and troubleshooting installations\n\n\n\n10:00 - NA\nIntroduction to Reproducible Research\nErik Fasterius\n\n\n10:25 - NA\nBreak\n\n\n\n10:40 - NA\nData management and project organisation\nJohn Sundh\n\n\n11:10 - NA\nVersion tracking and distributing your code\nErik Fasterius\n\n\n12:00 - NA\nLunch\n\n\n\n13:00 - NA\n… continued: Git\n\n\n\n14:40 - NA\nBreak\n\n\n\n15:00 - NA\nMastering your environment with Conda\nJohn Sundh\n\n\n16:45 - NA\nWrap-up day 1\nErik Fasterius\n \n26-Nov-2024TueStockholm\n\n09:00 - NA\nOrganise your analyses using workflow managers: Snakemake\nJohn Sundh\n\n\n10:20 - NA\nBreak\n\n\n\n10:40 - NA\n… continued: Snakemake\n\n\n\n12:00 - NA\nLunch\n\n\n\n13:00 - NA\n… continued: Snakemake\n\n\n\n14:40 - NA\nBreak\n\n\n\n15:00 - NA\nOrganise your analyses using workflow managers: Nextflow\nErik Fasterius\n\n\n16:45 - NA\nWrap-up day 2\nJohn Sundh\n\n\n18:00 - NA\nCourse dinner\n\n \n27-Nov-2024WedStockholm\n\n09:00 - NA\n… continued: Nextflow\n\n\n\n10:20 - NA\nBreak\n\n\n\n10:40 - NA\n… continued: Nextflow\n\n\n\n12:00 - NA\nLunch\n\n\n\n13:00 - NA\nWriting computational notebooks and reproducible reports: Quarto\nErik Fasterius\n\n\n14:30 - NA\nBreak\n\n\n\n14:50 - NA\n… continued: Quarto\n\n\n\n15:20 - NA\nWriting computational notebooks and reproducible reports: Jupyter\nJohn Sundh\n\n\n16:45 - NA\nWrap-up day 3\nErik Fasterius\n \n28-Nov-2024ThuStockholm\n\n09:00 - NA\n… continued: Jupyter\n\n\n\n09:45 - NA\nWorking with containers\nJohn Sundh\n\n\n10:30 - NA\nBreak\n\n\n\n10:50 - NA\n… continued: Containers\n\n\n\n12:00 - NA\nLunch\n\n\n\n13:00 - NA\n… continued: Containers\n\n\n\n14:20 - NA\nBreak\n\n\n\n14:40 - NA\n… continued: Containers\n\n\n\n16:45 - NA\nWrap-up day 4\nJohn Sundh\n \n29-Nov-2024FriStockholm\n\n09:00 - NA\nPutting it all together\nErik Fasterius\n\n\n10:20 - NA\nBreak\n\n\n\n10:40 - NA\ncontinued: Putting it all together\n\n\n\n12:00 - NA\nLunch\n\n\n\n13:00 - NA\ncontinued: Putting it all together\n\n\n\n14:20 - NA\nBreak\n\n\n\n14:40 - NA\ncontinued: Putting it all together\n\n\n\n15:45 - NA\nFinal wrap-up and end of the course\nJohn Sundh\n\n\n\n\n\n\n\n   Date    Venue    Slides    Lab    Video"
+    "text": "Time\nTopic\nInstructor\n\n\n \n25-Nov-2024MonStockholm\n\n09:00\nSetting up and troubleshooting installations\n\n\n\n10:00\nIntroduction to Reproducible Research\nErik Fasterius\n\n\n10:25\nBreak\n\n\n\n10:40\nData management and project organisation\nJohn Sundh\n\n\n11:10\nVersion tracking and distributing your code\nErik Fasterius\n\n\n12:00\nLunch\n\n\n\n13:00\n… continued: Git\n\n\n\n14:40\nBreak\n\n\n\n15:00\nMastering your environment with Conda\nJohn Sundh\n\n\n16:45\nWrap-up day 1\nErik Fasterius\n \n26-Nov-2024TueStockholm\n\n09:00\nOrganise your analyses using workflow managers: Snakemake\nJohn Sundh\n\n\n10:20\nBreak\n\n\n\n10:40\n… continued: Snakemake\n\n\n\n12:00\nLunch\n\n\n\n13:00\n… continued: Snakemake\n\n\n\n14:40\nBreak\n\n\n\n15:00\nOrganise your analyses using workflow managers: Nextflow\nErik Fasterius\n\n\n16:45\nWrap-up day 2\nJohn Sundh\n\n\n18:00\nCourse dinner\n\n \n27-Nov-2024WedStockholm\n\n09:00\n… continued: Nextflow\n\n\n\n10:20\nBreak\n\n\n\n10:40\n… continued: Nextflow\n\n\n\n12:00\nLunch\n\n\n\n13:00\nWriting computational notebooks and reproducible reports: Quarto\nErik Fasterius\n\n\n14:30\nBreak\n\n\n\n14:50\n… continued: Quarto\n\n\n\n15:20\nWriting computational notebooks and reproducible reports: Jupyter\nJohn Sundh\n\n\n16:45\nWrap-up day 3\nErik Fasterius\n \n28-Nov-2024ThuStockholm\n\n09:00\n… continued: Jupyter\n\n\n\n09:45\nWorking with containers\nJohn Sundh\n\n\n10:30\nBreak\n\n\n\n10:50\n… continued: Containers\n\n\n\n12:00\nLunch\n\n\n\n13:00\n… continued: Containers\n\n\n\n14:20\nBreak\n\n\n\n14:40\n… continued: Containers\n\n\n\n16:45\nWrap-up day 4\nJohn Sundh\n \n29-Nov-2024FriStockholm\n\n09:00\nPutting it all together\nErik Fasterius\n\n\n10:20\nBreak\n\n\n\n10:40\ncontinued: Putting it all together\n\n\n\n12:00\nLunch\n\n\n\n13:00\ncontinued: Putting it all together\n\n\n\n14:20\nBreak\n\n\n\n14:40\ncontinued: Putting it all together\n\n\n\n15:45\nFinal wrap-up and end of the course\nJohn Sundh\n\n\n\n\n\n\n\n   Date    Venue    Slides    Lab    Video"
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