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OceanOmics-amplicon-nf
OceanOmics-amplicon-nf PublicPipeline to analyse amplicon data from raw reads to ecologically informative phyloseq objects
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OceanOmics-amplicon-paper-analysis
OceanOmics-amplicon-paper-analysis PublicThis repository contains all data and code to reproduce the analysis of the "Exploring the data that explores the oceans" paper
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CurateWithClaude
CurateWithClaude PublicForked from Computational-Biology-OceanOmics/CurateWithClaude
Curating fish sightings with LLMs
Python 1
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Plastics_Plastic_Health_Map_shiny
Plastics_Plastic_Health_Map_shiny PublicA systematic evidence map on human health research data from 1960-2022
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Plastics_SEM_data_cleaning_figures
Plastics_SEM_data_cleaning_figures PublicSystematic Evidence Map data cleaning and figures
Repositories
- OceanOmics-amplicon-nf Public
Pipeline to analyse amplicon data from raw reads to ecologically informative phyloseq objects
- OceanOmics-classifier-comparison Public Forked from Computational-Biology-OceanOmics/OceanOmics-classifier-comparison
Comparing eDNA taxonomic classifiers
- OceanOmics-OceanGenomes-draft-genomes Public Forked from Computational-Biology-OceanOmics/OceanOmics-OceanGenomes-draft-genomes
Version 2 of the draft genome pipeline with changes to nextflows and scripts to read in config files and make more automated.
- OceanOmics-OceanGenomes-ref-genomes Public Forked from Computational-Biology-OceanOmics/OceanOmics-OceanGenomes-ref-genomes
OceanOmics-OceanGenomes reference genomes pipeline
- LCA_With_WoRMS Public Forked from Computational-Biology-OceanOmics/LCA_With_WoRMS
Calculating LCAs using WoRMS
- CurateWithClaude Public Forked from Computational-Biology-OceanOmics/CurateWithClaude
Curating fish sightings with LLMs
- Data_desc_fLetNeb1 Public Forked from laraparata/Data_desc_fLetNeb1
Code accompanying Chromosome-level genome assembly of the spangled emperor, Lethrinus nebulosus (Forsskål 1775)
- OceanOmics-AmpliconReference Public