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23.3 fb mfsh exportfrom prime #889

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23.3 fb mfsh exportfrom prime #889

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d8111b9
Update of link to eIACUIC
jonesgaohsu Nov 27, 2023
7d8a654
Update of link to eIACUIC
jonesgaohsu Nov 27, 2023
3409d71
Update of link to eIACUIC
jonesgaohsu Nov 28, 2023
7ea188f
Update of link to eIACUIC
jonesgaohsu Nov 28, 2023
dbb3005
Merge remote-tracking branch 'origin/release23.3-SNAPSHOT' into relea…
jonesgaohsu Dec 19, 2023
b86e5e6
New ETL For Hansen and changed apha numeric to numeric for step names
jonesgaohsu Jan 9, 2024
3b35c0f
Delete onprc_ehr/resources/views/protocolDetails.html
jonesgaohsu Jan 9, 2024
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105 changes: 0 additions & 105 deletions onprc_ehr/resources/etls/HansenQueriesToFile.xml
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106 changes: 106 additions & 0 deletions onprc_ehr/resources/etls/mfshToRandalData_2024.xml
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Original file line number Diff line number Diff line change
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<etl xmlns="http://labkey.org/etl/xml">
<name>mfshToRandalData_update</name>
<description>imports the data from mfsh animal details on ONPRC</description>
<transforms>
<transform id="step1">
<description>Define Hansen Study Animals 2022</description>
<source queryName="studyAnimals" schemaName="Randal_data"/>
<destination queryName="StudyDetails_RandalData" schemaName="Onprc_ehr" targetOption="truncate"/>
</transform>
<transform id="step2">
<description>Export Query to File Share</description>
<source queryName="RandData_AnimalGroups" schemaName="onprc_ehr"/>
<destination dir="hansenFiles" fileBaseName="AnimalGroups-${TransformRunId}-${Timestamp}" fileExtension="csv" type="file"/>
</transform>
<transform id="step3">
<description>Export Query to File Share</description>
<source queryName="RandData_blood" schemaName="onprc_ehr"/>
<destination dir="hansenFiles" fileBaseName="BloodDetails-${TransformRunId}-${Timestamp}" fileExtension="csv" type="file"/>
</transform>
<transform id="step4">
<description>Export Query to File Share</description>
<source queryName="RandData_birth" schemaName="onprc_ehr"/>
<destination dir="hansenFiles" fileBaseName="BirthDetails-${TransformRunId}-${Timestamp}" fileExtension="csv" type="file"/>
</transform>
<transform id="step5">
<description>Export Query to File Share</description>
<source queryName="RandData_assignment" schemaName="onprc_ehr"/>
<destination dir="hansenFiles" fileBaseName="assignment-${TransformRunId}-${Timestamp}" fileExtension="csv" type="file"/>
</transform>
<transform id="step6">
<description>Export Query to File Share</description>
<source queryName="RandData_arrival" schemaName="onprc_ehr"/>
<destination dir="hansenFiles" fileBaseName="arrival-${TransformRunId}-${Timestamp}" fileExtension="csv" type="file"/>
</transform>

<transform id="step7">
<description>Export Query to File Share</description>
<source queryName="RandData_weights" schemaName="onprc_ehr"/>
<destination dir="hansenFiles" fileBaseName="weights-${TransformRunId}-${Timestamp}" fileExtension="csv" type="file"/>
</transform>
<transform id="step8">
<description>Export Query to File Share</description>
<source queryName="RandData_Cases" schemaName="onprc_ehr"/>
<destination dir="hansenFiles" fileBaseName="Cases-${TransformRunId}-${Timestamp}" fileExtension="csv" type="file"/>
</transform>
<transform id="step9">
<description>Export Query to File Share</description>
<source queryName="RandData_clinremarks" schemaName="onprc_ehr"/>
<destination dir="hansenFiles" fileBaseName="clinremarks-${TransformRunId}-${Timestamp}" fileExtension="csv" type="file"/>
</transform>
<transform id="step10">
<description>Export Query to File Share</description>
<source queryName="RandData_demographics" schemaName="onprc_ehr"/>
<destination dir="hansenFiles" fileBaseName="demographics-${TransformRunId}-${Timestamp}" fileExtension="csv" type="file"/>
</transform>
<transform id="step11">
<description>Export Query to File Share</description>
<source queryName="RandData_deaths" schemaName="onprc_ehr"/>
<destination dir="hansenFiles" fileBaseName="deaths-${TransformRunId}-${Timestamp}" fileExtension="csv" type="file"/>
</transform>
<transform id="step12">
<description>Export Query to File Share</description>
<source queryName="RandData_departure" schemaName="onprc_ehr"/>
<destination dir="hansenFiles" fileBaseName="departure-${TransformRunId}-${Timestamp}" fileExtension="csv" type="file"/>
</transform>
<transform id="step13">
<description>Export Query to File Share</description>
<source queryName="RandData_drug" schemaName="onprc_ehr"/>
<destination dir="hansenFiles" fileBaseName="drug-${TransformRunId}-${Timestamp}" fileExtension="csv" type="file"/>
</transform>
<transform id="step14">
<description>Export Query to File Share</description>
<source queryName="RandData_flags" schemaName="onprc_ehr"/>
<destination dir="hansenFiles" fileBaseName="flags-${TransformRunId}-${Timestamp}" fileExtension="csv" type="file"/>
</transform>
<transform id="step15">
<description>Export Query to File Share</description>
<source queryName="RandData_Hematology" schemaName="onprc_ehr"/>
<destination dir="hansenFiles" fileBaseName="Hematology-${TransformRunId}-${Timestamp}" fileExtension="csv" type="file"/>
</transform>
<transform id="step16">
<description>Export Query to File Share</description>
<source queryName="RandData_Housing" schemaName="onprc_ehr"/>
<destination dir="hansenFiles" fileBaseName="Housing-${TransformRunId}-${Timestamp}" fileExtension="csv" type="file"/>
</transform>
<transform id="step17">
<description>Export Query to File Share Project</description>
<source queryName="project" schemaName="pf_ehrData"/>
<destination dir="hansenFiles" fileBaseName="Projects-${TransformRunId}-${Timestamp}" fileExtension="csv" type="file"/>
</transform>
<transform id="step18">
<description>Export Query to File Share Protocols</description>
<source queryName="protocol" schemaName="pf_ehrData"/>
<destination dir="hansenFiles" fileBaseName="Protocol-${TransformRunId}-${Timestamp}" fileExtension="csv" type="file"/>
</transform>
<transform id="step19">
<description>Export Query to File Share</description>
<source queryName="RandalData_bcs" schemaName="onprc_ehr"/>
<destination dir="hansonFiles" fileBaseName="Notes-${TransformRunId}-${Timestamp}" fileExtension="csv" type="file"/>
</transform>
</transforms>
<schedule>
<!--5AM-->
<cron expression="0 0 05 * * ?"/>
</schedule>
</etl>
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