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Issues list

🆕 [FEAT] Structure-based MSA enhancement New feature or request
#127 opened Feb 5, 2025 by jananiravi
@epbrenner
🆕 [FEAT] add parallelization options (even within R) enhancement New feature or request
#126 opened Feb 5, 2025 by jananiravi
@the-mayer @epbrenner
🆕 [FEAT] add slurm/pbs integration enhancement New feature or request
#125 opened Feb 5, 2025 by jananiravi
@the-mayer @epbrenner
🆕 [FEAT] Create custom bacterial DB enhancement New feature or request
#124 opened Feb 5, 2025 by jananiravi
@the-mayer @epbrenner
🆕 [FEAT] Build custom viral DB enhancement New feature or request
#123 opened Feb 5, 2025 by jananiravi
@the-mayer @epbrenner
🆕 [FEAT] Map protein names to UniProt/NCBI accession numbers enhancement New feature or request
#122 opened Jan 12, 2025 by jananiravi v1 | package release
@the-mayer @epbrenner
🆕 [FEAT] Map proteins to known pathogenesis DBs enhancement New feature or request
#121 opened Dec 12, 2024 by jananiravi
@the-mayer @epbrenner
removeTails: domains_keep undefined
#119 opened Oct 30, 2024 by the-mayer
@Klangina
2
Refactor Example Data: R-CMD check error bug Something isn't working
#118 opened Oct 29, 2024 by the-mayer
@Joiejoie1
5
Tree.R : R-CMD check
#113 opened Oct 28, 2024 by Klangina
2 of 5 tasks
1
[FEAT] Protein AccNum mapping bioinfo Bioinformatics related enhancement New feature or request outreachy for outreachy interns
#109 opened Oct 23, 2024 by Klangina
3 tasks
v0 | short-term fixes
@Klangina
3
[FEAT] Generate case study report Rmd/Qmd documentation Improvements or additions to documentation, incl. R docstring/roxygen2 enhancement New feature or request outreachy for outreachy interns package R package dev
#102 opened Oct 16, 2024 by jananiravi v1 | package release
@the-mayer @epbrenner
@Cateline @awasyn
[DOC] convertFA2Tree cleanup Rm deadcode & duplication, streamline documentation Improvements or additions to documentation, incl. R docstring/roxygen2 outreachy for outreachy interns
#94 opened Oct 9, 2024 by the-mayer v1 | package release
@jananiravi @the-mayer
@epbrenner @Klangina
2
[FEAT] Fix, Implement PspA Figure coding Coding experience (of any sort) would be helpful dataviz Data visualization enhancement New feature or request outreachy for outreachy interns package R package dev
#90 opened Oct 9, 2024 by falquaddoomi v0 | short-term fixes
1
[FEAT] Fix, Implement DciA Figure coding Coding experience (of any sort) would be helpful dataviz Data visualization enhancement New feature or request outreachy for outreachy interns package R package dev
#89 opened Oct 9, 2024 by falquaddoomi v0 | short-term fixes
1
@Klangina
2
[FEAT] Fix, Implement InlP Figure coding Coding experience (of any sort) would be helpful dataviz Data visualization enhancement New feature or request outreachy for outreachy interns package R package dev
#88 opened Oct 9, 2024 by falquaddoomi v0 | short-term fixes
1
@valentina-buoro
13
Tagging duplicate functions for later review. cleanup Rm deadcode & duplication, streamline enhancement New feature or request
#78 opened Oct 8, 2024 by the-mayer v1 | package release
@jananiravi @epbrenner
3
🐞[BUG] fix check bugs bug Something isn't working
#33 opened Oct 4, 2024 by awasyn v0 | short-term fixes
@falquaddoomi @the-mayer @epbrenner
1
[FEAT] Add GHA action to check package enhancement New feature or request
#32 opened Oct 4, 2024 by awasyn v1 | package release
@the-mayer @epbrenner
[FEAT] Create Unit tests for functions coding Coding experience (of any sort) would be helpful enhancement New feature or request outreachy for outreachy interns package R package dev
#29 opened Oct 4, 2024 by Seyi007
3 tasks
v1 | package release
@jananiravi @the-mayer
Automate case study creation | starting with rmd report bioinfo Bioinformatics related documentation Improvements or additions to documentation, incl. R docstring/roxygen2 good first issue Good for newcomers outreachy for outreachy interns
#27 opened Oct 2, 2024 by jananiravi
4 tasks
v1 | package release
@the-mayer @AbhirupaGhosh
@MyleeeA @Cateline @awasyn
21
Create function dependency map documentation Improvements or additions to documentation, incl. R docstring/roxygen2 outreachy for outreachy interns package R package dev
#26 opened Oct 2, 2024 by jananiravi
6 tasks
v0 | short-term fixes
@the-mayer @akwe-afriitech @SunSummoner
17
tree.R review/refactor cleanup Rm deadcode & duplication, streamline enhancement New feature or request
#18 opened Sep 20, 2024 by the-mayer v0 | short-term fixes
@the-mayer @epbrenner
Tagging functions to be renamed cleanup Rm deadcode & duplication, streamline documentation Improvements or additions to documentation, incl. R docstring/roxygen2 good first issue Good for newcomers outreachy for outreachy interns package R package dev
#7 opened Sep 18, 2024 by jananiravi
3 tasks
v0 | short-term fixes
@the-mayer @Seyi007 @Joiejoie1
47
R-CMD Check: no visible binding for global variable enhancement New feature or request good first issue Good for newcomers outreachy for outreachy interns package R package dev
#4 opened Aug 29, 2024 by the-mayer 100+ v1 | package release
@the-mayer @valentina-buoro @SunSummoner
17
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