ci: Switch to setup-nextflow (nf-core#3795)

JPejovicApis · Oct 10, 2023 · 65b8cc6 · 65b8cc6
1 parent aedbfb0
commit 65b8cc6
Showing 1 changed file with 7 additions and 38 deletions.
diff --git a/.github/workflows/test.yml b/.github/workflows/test.yml
@@ -97,25 +97,14 @@ jobs:
       - name: Install nf-core tools development version
         run: python -m pip install --upgrade --force-reinstall git+https://github.com/nf-core/tools.git@dev
 
-      - name: Install Nextflow
-        env:
-          CAPSULE_LOG: none
-        run: |
-          wget -qO- get.nextflow.io | bash
-          sudo mv nextflow /usr/local/bin/
+      - name: Setup Nextflow
+        uses: nf-core/setup-nextflow@v1
 
       - name: Lint ${{ matrix.tags }}
         run: nf-core modules lint ${{ matrix.tags }}
         # HACK
         if: startsWith( matrix.tags, 'subworkflow' ) != true
 
-      - uses: actions/cache@v3
-        with:
-          path: /usr/local/bin/nextflow
-          key: ${{ runner.os }}
-          restore-keys: |
-            ${{ runner.os }}
-
   pytest:
     runs-on: ubuntu-20.04
     name: pytest
@@ -278,19 +267,10 @@ jobs:
       - name: Install Python dependencies
         run: python -m pip install --upgrade pip pytest-workflow cryptography
 
-      - uses: actions/cache@v3
+      - name: Setup Nextflow ${{ matrix.NXF_VER }}
+        uses: nf-core/setup-nextflow@v1
         with:
-          path: /usr/local/bin/nextflow
-          key: ${{ runner.os }}
-          restore-keys: |
-            ${{ runner.os }}-nextflow-
-
-      - name: Install Nextflow
-        env:
-          CAPSULE_LOG: none
-        run: |
-          wget -qO- get.nextflow.io | bash
-          sudo mv nextflow /usr/local/bin/
+          version: "${{ matrix.NXF_VER }}"
 
       - name: Set up Singularity
         if: matrix.profile == 'singularity'
@@ -458,19 +438,8 @@ jobs:
     steps:
       - uses: actions/checkout@v3
 
-      - uses: actions/cache@v3
-        with:
-          path: /usr/local/bin/nextflow
-          key: ${{ runner.os }}
-          restore-keys: |
-            ${{ runner.os }}-nextflow-
-
-      - name: Install Nextflow
-        env:
-          CAPSULE_LOG: none
-        run: |
-          wget -qO- get.nextflow.io | bash
-          sudo mv nextflow /usr/local/bin/
+      - name: Setup Nextflow
+        uses: nf-core/setup-nextflow@v1
 
       - name: Cache nf-test installation
         id: cache-software