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Snakemake Code Linting #18

Merged
merged 1 commit into from
Jun 3, 2024
Merged

Snakemake Code Linting #18

merged 1 commit into from
Jun 3, 2024

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CarlosClassen
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Attempted to use snakefmt with CNVand and successfully improved the readability of the .smk files. However, the current version cannot handle global workflow dependencies (see this issue). Due to this limitation and the likely complex integration with GitHub Actions, this is postponed for now.

This closes #10.

@CarlosClassen CarlosClassen added the enhancement New feature or request label Jun 3, 2024
@CarlosClassen CarlosClassen self-assigned this Jun 3, 2024
@CarlosClassen CarlosClassen merged commit 2f123cc into main Jun 3, 2024
@CarlosClassen CarlosClassen deleted the feature/snakemake-linting branch June 3, 2024 16:53
@CarlosClassen CarlosClassen restored the feature/snakemake-linting branch June 3, 2024 16:53
@CarlosClassen CarlosClassen deleted the feature/snakemake-linting branch June 3, 2024 16:54
@CarlosClassen CarlosClassen restored the feature/snakemake-linting branch June 3, 2024 17:03
@CarlosClassen CarlosClassen deleted the feature/snakemake-linting branch June 3, 2024 17:04
@CarlosClassen
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Just played with branch renaming, got a little typo there.

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Automate snakemake code linting
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