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return gene priority column in output #77

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return gene priority column in output

return gene priority column in output #77

Workflow file for this run

.github/workflows/tests.yml at 9786c95
name: Tests
on:
push:
branches:
- master
pull_request:
branches:
- master
jobs:
linter:
name: Ruff Linter
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v3
- uses: chartboost/ruff-action@v1
if: false
testexactmatch:
name: Exact Match Test
runs-on: ubuntu-latest
steps:
- name: Checkout Code
uses: actions/checkout@v3
- name: Set up Python 3.9
uses: actions/setup-python@v4
with:
python-version: '3.9'
- name: Install Dependencies
run: |
python -m pip install --upgrade pip
pip install -e .
pip install pytest
- name: Run Test
run: pytest pepmatch/tests/test_exact_match.py
testmismatch:
name: Mismatch Test
runs-on: ubuntu-latest
steps:
- name: Checkout Code
uses: actions/checkout@v3
- name: Set up Python 3.9
uses: actions/setup-python@v4
with:
python-version: '3.9'
- name: Install Dependencies
run: |
python -m pip install --upgrade pip
pip install -e .
pip install pytest
- name: Run Test
run: pytest pepmatch/tests/test_mismatching.py
testbestmatch:
name: Best Match Test
runs-on: ubuntu-latest
steps:
- name: Checkout Code
uses: actions/checkout@v3
- name: Set up Python 3.9
uses: actions/setup-python@v4
with:
python-version: '3.9'
- name: Install Dependencies
run: |
python -m pip install --upgrade pip
pip install -e .
pip install pytest
- name: Run Test
run: pytest pepmatch/tests/test_best_match.py
testdiscontinuoussearch:
name: Discontinuous Epitope Search Test
runs-on: ubuntu-latest
steps:
- name: Checkout Code
uses: actions/checkout@v3
- name: Set up Python 3.9
uses: actions/setup-python@v4
with:
python-version: '3.9'
- name: Install Dependencies
run: |
python -m pip install --upgrade pip
pip install -e .
pip install pytest
- name: Run Test
run: pytest pepmatch/tests/test_discontinuous_search.py
testparallelmatch:
name: Parallel Test
runs-on: ubuntu-latest
steps:
- name: Checkout Code
uses: actions/checkout@v3
- name: Set up Python 3.9
uses: actions/setup-python@v4
with:
python-version: '3.9'
- name: Install Dependencies
run: |
python -m pip install --upgrade pip
pip install -e .
pip install pytest
- name: Run Test
run: pytest pepmatch/tests/test_parallel_match.py
testoutput:
name: Output Test
runs-on: ubuntu-latest
steps:
- name: Checkout Code
uses: actions/checkout@v3
- name: Set up Python 3.9
uses: actions/setup-python@v4
with:
python-version: '3.9'
- name: Install Dependencies
run: |
python -m pip install --upgrade pip
pip install -e .
pip install pytest
- name: Run Test
run: pytest pepmatch/tests/test_output.py