forked from VIDA-NYU/genotet
-
Notifications
You must be signed in to change notification settings - Fork 0
Commit
This commit does not belong to any branch on this repository, and may belong to a fork outside of the repository.
- Loading branch information
1 parent
6fea741
commit f9aa131
Showing
67 changed files
with
21,098 additions
and
4 deletions.
There are no files selected for viewing
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,21 @@ | ||
| import numpy as np | ||
| import random | ||
| import string | ||
| f = open('bed_output.txt', 'w') | ||
| start_all = 2999997 | ||
| end_all = 3001000 | ||
|
|
||
| offset = 2999997 | ||
| gap = random.randint(10, 50) | ||
| length = random.randint(1, 10) | ||
| offset += gap | ||
| while offset <= end_all: | ||
| start = offset | ||
| end = offset + length | ||
| name = ''.join(random.choice(string.lowercase) for i in range(10)) | ||
| output = str(start) + '\t' + str(end) + '\t' + str(name) + '\n' | ||
| f.write(output) | ||
|
|
||
| gap = random.randint(10, 50) | ||
| length = random.randint(1, 10) | ||
| offset += length |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,366 @@ | ||
| track name=bed_data.bed description="./bed_data.bed, FDR=.15" itemRgb="On" | ||
| chr1 3000047 3000055 ibyhoyfslz | ||
| chr1 3000052 3000057 lslgfjhsit | ||
| chr1 3000055 3000058 vifmuicdqc | ||
| chr1 3000061 3000067 naahwiptdn | ||
| chr1 3000069 3000077 dpkbgebofk | ||
| chr1 3000079 3000089 yndxypenqq | ||
| chr1 3000089 3000099 tyttlgrgpv | ||
| chr1 3000091 3000093 dhgboxsias | ||
| chr1 3000099 3000107 gvrajyhhrg | ||
| chr1 3000108 3000117 hwkpgcjpko | ||
| chr1 3000111 3000114 uqkflveygm | ||
| chr1 3000113 3000115 xzgghexzrm | ||
| chr1 3000115 3000117 kjmkjowwxw | ||
| chr1 3000116 3000117 ikgmrmudvr | ||
| chr1 3000126 3000136 qskpfexlql | ||
| chr1 3000136 3000146 cddcnqcqrn | ||
| chr1 3000137 3000138 vvhjknkquj | ||
| chr1 3000141 3000145 sffhwjcjlj | ||
| chr1 3000145 3000149 irwxkvrjbn | ||
| chr1 3000147 3000149 msbqhuzwku | ||
| chr1 3000152 3000157 noboofesxi | ||
| chr1 3000158 3000164 twsobzexyq | ||
| chr1 3000168 3000178 lkkzwkmpxy | ||
| chr1 3000171 3000174 gsdwtmfudf | ||
| chr1 3000174 3000177 lfvkbcgyid | ||
| chr1 3000175 3000176 yarixrgzss | ||
| chr1 3000184 3000193 tuoinbiide | ||
| chr1 3000188 3000192 hwxnjcddsh | ||
| chr1 3000194 3000200 tgdhfcohgb | ||
| chr1 3000197 3000200 cmxtmjusyg | ||
| chr1 3000205 3000213 xsecadgnuo | ||
| chr1 3000207 3000209 gxznwnfmmj | ||
| chr1 3000214 3000221 mtkneewxmi | ||
| chr1 3000224 3000234 fkgopmvctc | ||
| chr1 3000226 3000228 oxyzaqtgja | ||
| chr1 3000235 3000244 uetdpqounw | ||
| chr1 3000241 3000247 wozjvhcvlm | ||
| chr1 3000248 3000255 zetteqbdck | ||
| chr1 3000255 3000262 nmuidxvyhj | ||
| chr1 3000258 3000261 jydomnmher | ||
| chr1 3000266 3000274 hydpakrhkh | ||
| chr1 3000267 3000268 ukvqkjvwpz | ||
| chr1 3000271 3000275 jijdnjnmcg | ||
| chr1 3000274 3000277 kcywuhvubu | ||
| chr1 3000277 3000280 kcgnnwaxzj | ||
| chr1 3000280 3000283 vtvwsmzqlx | ||
| chr1 3000284 3000288 mifgvfvres | ||
| chr1 3000288 3000292 hisuxudldm | ||
| chr1 3000295 3000302 prrzohymkl | ||
| chr1 3000305 3000315 mycbfnvmvk | ||
| chr1 3000315 3000325 zlpfsebtbs | ||
| chr1 3000318 3000321 myfayxykuv | ||
| chr1 3000321 3000324 vlecxahqon | ||
| chr1 3000330 3000339 cbegvqndyq | ||
| chr1 3000337 3000344 wohavruqhd | ||
| chr1 3000340 3000343 zeanvawoxw | ||
| chr1 3000346 3000352 vfudlhxpco | ||
| chr1 3000349 3000352 nxabzbhlpy | ||
| chr1 3000355 3000361 musbhhtrbb | ||
| chr1 3000361 3000367 fmcogkidoi | ||
| chr1 3000362 3000363 gjyndnlnrj | ||
| chr1 3000368 3000374 sbqgufznyt | ||
| chr1 3000375 3000382 awtoyagrlv | ||
| chr1 3000384 3000393 rmjadxoyys | ||
| chr1 3000386 3000388 vpsmhlcwre | ||
| chr1 3000393 3000400 ovesxlojwd | ||
| chr1 3000403 3000413 zvuvuukqxp | ||
| chr1 3000409 3000415 sdjlqgmafc | ||
| chr1 3000411 3000413 uzlmcqnxlo | ||
| chr1 3000421 3000431 zcqauiopiw | ||
| chr1 3000423 3000425 rbceqkkebz | ||
| chr1 3000424 3000425 qfofayewvl | ||
| chr1 3000434 3000444 hapzplwcfx | ||
| chr1 3000443 3000452 kiiicqbqfn | ||
| chr1 3000444 3000445 mffzwrqkns | ||
| chr1 3000450 3000456 uufzdbgquv | ||
| chr1 3000451 3000452 cuhutbiluh | ||
| chr1 3000458 3000465 aaybqtxora | ||
| chr1 3000467 3000476 jzphipudtr | ||
| chr1 3000471 3000475 yugrlrukje | ||
| chr1 3000474 3000477 rktbeqdmoy | ||
| chr1 3000481 3000488 wjqhvbdkca | ||
| chr1 3000490 3000499 wbbgzjhnfq | ||
| chr1 3000497 3000504 elckacslto | ||
| chr1 3000501 3000505 ihsqmdahrs | ||
| chr1 3000508 3000515 dtjevnuzma | ||
| chr1 3000516 3000524 ktnhwtzaml | ||
| chr1 3000522 3000528 xonzcokgtg | ||
| chr1 3000529 3000536 gewpsfgogz | ||
| chr1 3000532 3000535 uvisdcqfhj | ||
| chr1 3000540 3000548 weswruvimy | ||
| chr1 3000543 3000546 fzickpwybe | ||
| chr1 3000547 3000551 kefwmyeypz | ||
| chr1 3000553 3000559 jmppzplvmc | ||
| chr1 3000561 3000569 qskgmhdsfj | ||
| chr1 3000562 3000563 xqcluidovw | ||
| chr1 3000569 3000576 wpnuictbuh | ||
| chr1 3000571 3000573 gmcccntzxm | ||
| chr1 3000578 3000585 hwdoqabdmd | ||
| chr1 3000588 3000598 ozfpjwedbs | ||
| chr1 3000592 3000596 oqdncjqmjk | ||
| chr1 3000593 3000594 ifmhtcerul | ||
| chr1 3000599 3000605 zfxivkzzut | ||
| chr1 3000603 3000607 cxaafbndsg | ||
| chr1 3000610 3000617 zubfdwdjsx | ||
| chr1 3000613 3000616 bkaebbghoj | ||
| chr1 3000618 3000623 vxqlcukqco | ||
| chr1 3000622 3000626 tflyfbayje | ||
| chr1 3000629 3000636 obkfxkkolf | ||
| chr1 3000637 3000645 cynzrsbmne | ||
| chr1 3000640 3000643 slmatrqvgi | ||
| chr1 3000642 3000644 bcnijejtfz | ||
| chr1 3000650 3000658 qwpxaiuquk | ||
| chr1 3000654 3000658 epvvcxryxz | ||
| chr1 3000658 3000662 rxapaagmci | ||
| chr1 3000660 3000662 fodojmjhwd | ||
| chr1 3000662 3000664 qtbszspgkg | ||
| chr1 3000664 3000666 khxfdvpeci | ||
| chr1 3000673 3000682 vixzyusscb | ||
| chr1 3000681 3000689 ndqywkvewc | ||
| chr1 3000686 3000691 dikhetolfu | ||
| chr1 3000688 3000690 iagrxwoqxp | ||
| chr1 3000691 3000694 xpfftmmfvq | ||
| chr1 3000697 3000703 dqtpseqzit | ||
| chr1 3000699 3000701 zmbbhnqdyk | ||
| chr1 3000702 3000705 fvmcyvqyzh | ||
| chr1 3000705 3000708 onwvvnuhoa | ||
| chr1 3000711 3000717 tfpzqexfif | ||
| chr1 3000715 3000719 jgcxqodcqu | ||
| chr1 3000725 3000735 xfotfkegyv | ||
| chr1 3000734 3000743 jcpdredlqa | ||
| chr1 3000739 3000744 inzzlacdei | ||
| chr1 3000748 3000757 lwpmvdjtgd | ||
| chr1 3000752 3000756 pbqxgriqxx | ||
| chr1 3000760 3000768 gntxxpavrr | ||
| chr1 3000765 3000770 iohwxvpgin | ||
| chr1 3000769 3000773 jbcvrtythn | ||
| chr1 3000778 3000787 nwwbksovhm | ||
| chr1 3000787 3000796 tzkbtngxsa | ||
| chr1 3000788 3000789 wkodytyxij | ||
| chr1 3000790 3000792 zyqqwkpgbs | ||
| chr1 3000796 3000802 otbkfcwfia | ||
| chr1 3000797 3000798 rhsilnifdl | ||
| chr1 3000799 3000801 oievwhhsvb | ||
| chr1 3000807 3000815 cqixrtjbar | ||
| chr1 3000809 3000811 ezthxfkfdn | ||
| chr1 3000817 3000825 edwlnuruxy | ||
| chr1 3000825 3000833 meyefgjrqp | ||
| chr1 3000826 3000827 rjszlipanq | ||
| chr1 3000828 3000830 bmdcyodidd | ||
| chr1 3000831 3000834 skyusxkyst | ||
| chr1 3000832 3000833 wlfpkqndin | ||
| chr1 3000838 3000844 ubkejgkyeg | ||
| chr1 3000839 3000840 xrjtuyzpin | ||
| chr1 3000845 3000851 woysvhsonn | ||
| chr1 3000848 3000851 drtmdkvzxh | ||
| chr1 3000853 3000858 fwzunjfwlr | ||
| chr1 3000856 3000859 rcocoizxsa | ||
| chr1 3000858 3000860 pdyornajdc | ||
| chr1 3000860 3000862 tlblrkabjc | ||
| chr1 3000867 3000874 dhwmbuxggk | ||
| chr1 3000870 3000873 qvfhiktuvm | ||
| chr1 3000878 3000886 witejivbyj | ||
| chr1 3000880 3000882 sdfckvofnb | ||
| chr1 3000886 3000892 zvmpsstvgr | ||
| chr1 3000894 3000902 lfnjglzmjf | ||
| chr1 3000899 3000904 pgsssgcvcz | ||
| chr1 3000902 3000905 uqxrjshpxe | ||
| chr1 3000911 3000920 iwvcgkzswu | ||
| chr1 3000913 3000915 ngoegsrxlv | ||
| chr1 3000920 3000927 dnvqctwwcc | ||
| chr1 3000926 3000932 dicuypondb | ||
| chr1 3000936 3000946 gdnwjaqiku | ||
| chr1 3000945 3000954 njmxkwjiym | ||
| chr1 3000953 3000961 bawngjveqf | ||
| chr1 3000960 3000967 bbpgtpbsfk | ||
| chr1 3000964 3000968 ifsiibhuyz | ||
| chr1 3000969 3000974 avlohmzpop | ||
| chr1 3000971 3000973 qkmxrlrhzc | ||
| chr1 3000977 3000983 mwdrkjtbms | ||
| chr1 3000987 3000997 zgjakckpwp | ||
| chr1 3000997 3001007 shdqtufuic | ||
| chr1 3001000 3001003 pdjoklunog | ||
| chr2 3000024 3000031 spgzipdsqn | ||
| chr2 3000028 3000032 zwrwyeggtp | ||
| chr2 3000031 3000034 jdesttvgsm | ||
| chr2 3000033 3000035 smaodtulvl | ||
| chr2 3000035 3000037 bryslvhnmu | ||
| chr2 3000038 3000041 arzbijyyvb | ||
| chr2 3000047 3000056 sgnsoryjdn | ||
| chr2 3000049 3000051 sswumvnlkn | ||
| chr2 3000056 3000063 okimoegrqy | ||
| chr2 3000063 3000070 efivphsnxq | ||
| chr2 3000065 3000067 svrhvmsbwv | ||
| chr2 3000070 3000075 xwcbpeifmm | ||
| chr2 3000075 3000080 gwtwvmfpdr | ||
| chr2 3000077 3000079 ghrvhxhsek | ||
| chr2 3000080 3000083 wnwsqnopqa | ||
| chr2 3000090 3000100 uzhfcwnuev | ||
| chr2 3000095 3000100 bhhqfotmlc | ||
| chr2 3000103 3000111 gytpmvoavh | ||
| chr2 3000106 3000109 tqsgrqyabm | ||
| chr2 3000114 3000122 akpkygyjrz | ||
| chr2 3000122 3000130 qvutuuktxf | ||
| chr2 3000128 3000134 kyjmpcskuj | ||
| chr2 3000135 3000142 ismbwnyrmv | ||
| chr2 3000139 3000143 rwhripezdy | ||
| chr2 3000148 3000157 qpsrszybaf | ||
| chr2 3000150 3000152 xnyxboyhvd | ||
| chr2 3000154 3000158 rjhjotudil | ||
| chr2 3000163 3000172 hogzcwtyah | ||
| chr2 3000167 3000171 qmwajyvqpt | ||
| chr2 3000169 3000171 mweykhrszp | ||
| chr2 3000179 3000189 xwxarfdzfu | ||
| chr2 3000181 3000183 gdchgkjtwv | ||
| chr2 3000182 3000183 iqwlcfzxqx | ||
| chr2 3000191 3000200 mwelcxyivt | ||
| chr2 3000199 3000207 vjlubqzjmt | ||
| chr2 3000209 3000219 rcnwfdcriz | ||
| chr2 3000213 3000217 hfdbdwazoy | ||
| chr2 3000218 3000223 clqoferyce | ||
| chr2 3000222 3000226 kbumtjtrie | ||
| chr2 3000224 3000226 yydqvdyksy | ||
| chr2 3000233 3000242 cxstxiketv | ||
| chr2 3000238 3000243 njvtzzqiqr | ||
| chr2 3000240 3000242 kwxiqlvtbv | ||
| chr2 3000250 3000260 xzwbulmwnc | ||
| chr2 3000256 3000262 isjuigcftq | ||
| chr2 3000265 3000274 meqvtjsawb | ||
| chr2 3000271 3000277 qxrqnyfxbi | ||
| chr2 3000276 3000281 iurnoizqgm | ||
| chr2 3000282 3000288 iswajfxkkz | ||
| chr2 3000284 3000286 iutidzfuno | ||
| chr2 3000291 3000298 azypxxqjan | ||
| chr2 3000301 3000311 rzhfnugmfy | ||
| chr2 3000311 3000321 kqadokicxk | ||
| chr2 3000321 3000331 xjcenoaqno | ||
| chr2 3000322 3000323 zftezbktmp | ||
| chr2 3000326 3000330 vyttbzhofk | ||
| chr2 3000335 3000344 zrebhjvfdi | ||
| chr2 3000345 3000355 afgriyvezy | ||
| chr2 3000348 3000351 hnkzqcznnz | ||
| chr2 3000350 3000352 scncstgvxe | ||
| chr2 3000355 3000360 haciwzqkaw | ||
| chr2 3000358 3000361 fbiruqyglq | ||
| chr2 3000360 3000362 zahpwovnsh | ||
| chr2 3000364 3000368 dqqgmwvjtt | ||
| chr2 3000374 3000384 xkbzfzinve | ||
| chr2 3000376 3000378 vfbbfbyvyv | ||
| chr2 3000382 3000388 mwthkfjmlq | ||
| chr2 3000383 3000384 dondsslelm | ||
| chr2 3000388 3000393 afbmafosgd | ||
| chr2 3000393 3000398 xsqhoqbevr | ||
| chr2 3000400 3000407 qltbqjjbpb | ||
| chr2 3000401 3000402 ztcgtluiox | ||
| chr2 3000402 3000403 omwjloygxm | ||
| chr2 3000411 3000420 qzgdyifbxo | ||
| chr2 3000416 3000421 gzimaubzmo | ||
| chr2 3000423 3000430 wtzjbrmlri | ||
| chr2 3000426 3000429 ahgmztvgxk | ||
| chr2 3000430 3000434 bgonzxczqw | ||
| chr2 3000438 3000446 cofhpefrca | ||
| chr2 3000440 3000442 hsvkajinvr | ||
| chr2 3000447 3000454 cgmainnhhb | ||
| chr2 3000456 3000465 jwhmghiamb | ||
| chr2 3000461 3000466 vdedicljvs | ||
| chr2 3000469 3000477 ckgihfuixz | ||
| chr2 3000479 3000489 whnmrmcszk | ||
| chr2 3000486 3000493 dafgaqapmv | ||
| chr2 3000488 3000490 zjgakmfepx | ||
| chr2 3000497 3000506 zcnnsodwdk | ||
| chr2 3000505 3000513 ydylowjstn | ||
| chr2 3000511 3000517 lablkvgjnm | ||
| chr2 3000514 3000517 znzkpjkchb | ||
| chr2 3000520 3000526 vllvohwxls | ||
| chr2 3000529 3000538 byaepmbfpb | ||
| chr2 3000539 3000549 agkqopnqnb | ||
| chr2 3000545 3000551 moapnfvxrm | ||
| chr2 3000548 3000551 yssiwavbfb | ||
| chr2 3000549 3000550 vnjbdbhwim | ||
| chr2 3000554 3000559 pykjnnfyog | ||
| chr2 3000561 3000568 wgigzjfjyu | ||
| chr2 3000566 3000571 gqqzknnudm | ||
| chr2 3000571 3000576 tfnojsrmrq | ||
| chr2 3000577 3000583 sokbfcptvh | ||
| chr2 3000578 3000579 kcmnualmbh | ||
| chr2 3000581 3000584 ciuvvyupks | ||
| chr2 3000585 3000589 vbzoiqcoob | ||
| chr2 3000592 3000599 iqzieczfnd | ||
| chr2 3000594 3000596 cmedjkkrzf | ||
| chr2 3000597 3000600 rvzuvprkro | ||
| chr2 3000603 3000609 deqcxbsfum | ||
| chr2 3000604 3000605 vykpbsotre | ||
| chr2 3000605 3000606 jqthiabjqe | ||
| chr2 3000610 3000615 aljshybsys | ||
| chr2 3000618 3000626 bjdecljkcj | ||
| chr2 3000623 3000628 cptdokcbay | ||
| chr2 3000630 3000637 ytpmdypebu | ||
| chr2 3000632 3000634 qqlijmxkic | ||
| chr2 3000639 3000646 kcdnxqeegc | ||
| chr2 3000645 3000651 jfngqhnzaw | ||
| chr2 3000654 3000663 zkrpqclhxq | ||
| chr2 3000661 3000668 ggxhodvdlw | ||
| chr2 3000664 3000667 ckwrxdmwnj | ||
| chr2 3000674 3000684 izdkihndsh | ||
| chr2 3000675 3000676 htdnfujxrb | ||
| chr2 3000677 3000679 zrzcngegsv | ||
| chr2 3000680 3000683 vzuwqumpeu | ||
| chr2 3000689 3000698 yzksqedcvb | ||
| chr2 3000692 3000695 lzzfmotkqo | ||
| chr2 3000702 3000712 jxikssczjs | ||
| chr2 3000703 3000704 oxewazbcei | ||
| chr2 3000707 3000711 mjwsvkvvsl | ||
| chr2 3000710 3000713 qmkpfwcfjr | ||
| chr2 3000714 3000718 lbkdkanmub | ||
| chr2 3000721 3000728 jzxjlsakwh | ||
| chr2 3000726 3000731 jjcifrgawf | ||
| chr2 3000733 3000740 aguwgqrkya | ||
| chr2 3000743 3000753 adiuksbmel | ||
| chr2 3000744 3000745 scvkekkofg | ||
| chr2 3000745 3000746 dyimyzvcrx | ||
| chr2 3000746 3000747 rvdonikqyv | ||
| chr2 3000754 3000762 gxrltwcbcy | ||
| chr2 3000755 3000756 kdxxgqhipq | ||
| chr2 3000760 3000765 gqonfqdokv | ||
| chr2 3000761 3000762 kyfapssouc | ||
| chr2 3000771 3000781 fvewkciffq | ||
| chr2 3000777 3000783 ocxhvohike | ||
| chr2 3000787 3000797 itdoplbdtn | ||
| chr2 3000796 3000805 grbcpmilso | ||
| chr2 3000805 3000814 qbyaekpcuq | ||
| chr2 3000807 3000809 vcwygessnk | ||
| chr2 3000810 3000813 ldclaybgpp | ||
| chr2 3000811 3000812 hitweyoehk | ||
| chr2 3000821 3000831 nqvzfqfnat | ||
| chr2 3000827 3000833 itbjhcvhkh | ||
| chr2 3000829 3000831 ibzmyooaur | ||
| chr2 3000834 3000839 kfwtccjivr | ||
| chr2 3000838 3000842 hgtmmxwjgo | ||
| chr2 3000841 3000844 jxykkbxfdr | ||
| chr2 3000845 3000849 myejypsmkb | ||
| chr2 3000849 3000853 qzrsagdlzg | ||
| chr2 3000854 3000859 pptyudutzc | ||
| chr2 3000857 3000860 gcjdqwbpom | ||
| chr2 3000858 3000859 wqntqeapli | ||
| chr2 3000866 3000874 lbyhyirfby | ||
| chr2 3000872 3000878 axqblbvdfd | ||
| chr2 3000878 3000884 xibarvzkvc | ||
| chr2 3000886 3000894 zyqmanoerw | ||
| chr2 3000887 3000888 cmxeakkkrm | ||
| chr2 3000889 3000891 dgiyderubd | ||
| chr2 3000896 3000903 gkttephqob | ||
| chr2 3000903 3000910 qdaijlecmx | ||
| chr2 3000913 3000923 hegcjedrms | ||
| chr2 3000920 3000927 lfliteeznt | ||
| chr2 3000923 3000926 somivswmxg | ||
| chr2 3000932 3000941 sstkppjmer | ||
| chr2 3000939 3000946 chqkbajkne | ||
| chr2 3000946 3000953 lpkjpjkhqh | ||
| chr2 3000951 3000956 kohqhravve | ||
| chr2 3000959 3000967 uzfzuliypm | ||
| chr2 3000969 3000979 ujxidpqtoj | ||
| chr2 3000979 3000989 wuwqxuvpdj | ||
| chr2 3000985 3000991 poyboycsdf | ||
| chr2 3000994 3001003 vvskbnrjqp |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1 @@ | ||
| bed_data.bed |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1 @@ | ||
| bed_data |
Oops, something went wrong.