Merge branch 'master' of https://github.com/nithujohn/psi-ms-CV

HUPO-PSI · Oct 31, 2024 · 7265955 · 7265955
2 parents c07c4d3 + 62d490a
commit 7265955
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diff --git a/.github/workflows/validate-owl.yaml b/.github/workflows/validate-owl.yaml
@@ -43,8 +43,8 @@ jobs:
       - name: Validate OWL File for OLS
         run: |   
            cd ols4/dataload/rdf2json/target
-           wget https://raw.githubusercontent.com/ypriverol/psi-ms-CV/dev/owl-config-ols/foundry.json
-           wget https://raw.githubusercontent.com/ypriverol/psi-ms-CV/dev/owl-config-ols/fail_owl.json
+           wget https://raw.githubusercontent.com/HUPO-PSI/psi-ms-CV/master/owl-config-ols/foundry.json
+           wget https://raw.githubusercontent.com/HUPO-PSI/psi-ms-CV/master/owl-config-ols/fail_owl.json
            java -jar rdf2json-1.0-SNAPSHOT.jar --config foundry.json --output foundry_out.json
            if diff foundry_out.json fail_owl.json > /dev/null; then
               echo "The PSI-MS ontology has an error in the owl file and do not allow to import in OLS"

diff --git a/psi-ms.obo b/psi-ms.obo
@@ -4,6 +4,8 @@ date: 31:10:2024 10:20
 saved-by: Nithu Sara John
 date: 11:10:2024 07:15
 saved-by: Joshua Klein
+date: 30:10:2024 10:15
+saved-by: Yasset Perez-Riverl
 auto-generated-by: OBO-Edit 2.3.1
 default-namespace: MS
 namespace-id-rule: * MS:$sequence(7,0,9999999)$
@@ -22721,6 +22723,12 @@ is_a: MS:1003431 ! pLink
 is_a: MS:1001139 ! quantitation software name
 is_a: MS:1001456 ! analysis software
 
+id: MS:1003425
+name: quantms
+def: "Cloud-based pipeline for quantitative proteomics that enables the reanalysis of public proteomics data." [PMID:38965444]
+is_a: MS:1001456 ! analysis software
+is_a: MS:1001139 ! quantitation software name
+
 [Term]
 id: MS:4000000
 name: PSI-MS CV Quality Control Vocabulary

diff --git a/psi-ms.owl b/psi-ms.owl
@@ -10,14 +10,14 @@
      xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
      xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
     <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/ms.owl">
-        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/ms/4.1.182/ms.owl"/>
+        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/ms/4.1.183/ms.owl"/>
         <oboInOwl:NamespaceIdRule>* MS:$sequence(7,0,9999999)$</oboInOwl:NamespaceIdRule>
         <oboInOwl:NamespaceIdRule>* PEFF:$sequence(7,0,9999999)$</oboInOwl:NamespaceIdRule>
         <oboInOwl:auto-generated-by>OBO-Edit 2.3.1</oboInOwl:auto-generated-by>
-        <oboInOwl:date>11:10:2024 07:15</oboInOwl:date>
+        <oboInOwl:date>30:10:2024 10:15</oboInOwl:date>
         <oboInOwl:default-namespace>MS</oboInOwl:default-namespace>
         <oboInOwl:hasOBOFormatVersion>1.2</oboInOwl:hasOBOFormatVersion>
-        <oboInOwl:saved-by>Joshua Klein</oboInOwl:saved-by>
+        <oboInOwl:saved-by>Yasset Perez-Riverol</oboInOwl:saved-by>
         <rdfs:comment>For any queries contact [email protected]</rdfs:comment>
         <rdfs:comment>This work is licensed under the Creative Commons Attribution 4.0 International (CC BY 4.0) license.</rdfs:comment>
         <rdfs:comment>To view a copy of this license, visit https://creativecommons.org/licenses/by/4.0/ or send a letter to Creative Commons, 444 Castro Street, Suite 900, Mountain View, California, 94041, USA.</rdfs:comment>
@@ -71549,6 +71549,25 @@
 
 
 
+    <!-- http://purl.obolibrary.org/obo/MS_1003425 -->
+
+    <owl:Class rdf:about="http://purl.obolibrary.org/obo/MS_1003425">
+        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/MS_1001139"/>
+        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/MS_1001456"/>
+        <obo:IAO_0000115>Cloud-based pipeline for quantitative proteomics that enables the reanalysis of public proteomics data.</obo:IAO_0000115>
+        <oboInOwl:hasOBONamespace>MS</oboInOwl:hasOBONamespace>
+        <oboInOwl:id>MS:1003425</oboInOwl:id>
+        <rdfs:label>quantms</rdfs:label>
+    </owl:Class>
+    <owl:Axiom>
+        <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/MS_1003425"/>
+        <owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
+        <owl:annotatedTarget>Cloud-based pipeline for quantitative proteomics that enables the reanalysis of public proteomics data.</owl:annotatedTarget>
+        <oboInOwl:hasDbXref>PMID:38965444</oboInOwl:hasDbXref>
+    </owl:Axiom>
+
+
+
     <!-- http://purl.obolibrary.org/obo/MS_4000000 -->
 
     <owl:Class rdf:about="http://purl.obolibrary.org/obo/MS_4000000">