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still needs correct validation result evaluation
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Original file line number | Diff line number | Diff line change |
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@@ -22,11 +22,12 @@ jobs: | |
- name: Set up Python | ||
uses: actions/setup-python@v2 | ||
with: | ||
python-version: '3.8' | ||
python-version: '3.10' | ||
- name: Install dependencies | ||
run: | | ||
python -m pip install --upgrade pip | ||
pip install jsonschema check-jsonschema pymzqc click | ||
pip install jsonschema check-jsonschema click | ||
pip install -U git+https://github.com/MS-Quality-hub/[email protected] | ||
- name: Syntactic Validatation of Example mzQC Files | ||
run: | | ||
for i in $PATH_TO_EXAMPLES/*.mz[qQ][cC]; do | ||
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@@ -42,7 +43,7 @@ jobs: | |
run: | | ||
for i in $PATH_TO_EXAMPLES/*.mz[qQ][cC]; do | ||
echo "Semantic Validation of $i" | ||
mzQC-offline-validator $i | ||
mzqc-validator $i | ||
if [ $? -ne 0 ]; then | ||
echo "Failed to validate $i" | ||
exit 1 | ||
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