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fix mzqc-validator installation
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still needs correct validation result evaluation
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mwalzer authored Jul 22, 2024
1 parent 81ff832 commit e2b41c0
Showing 1 changed file with 4 additions and 3 deletions.
7 changes: 4 additions & 3 deletions .github/workflows/tests.yml
Original file line number Diff line number Diff line change
Expand Up @@ -22,11 +22,12 @@ jobs:
- name: Set up Python
uses: actions/setup-python@v2
with:
python-version: '3.8'
python-version: '3.10'
- name: Install dependencies
run: |
python -m pip install --upgrade pip
pip install jsonschema check-jsonschema pymzqc click
pip install jsonschema check-jsonschema click
pip install -U git+https://github.com/MS-Quality-hub/[email protected]
- name: Syntactic Validatation of Example mzQC Files
run: |
for i in $PATH_TO_EXAMPLES/*.mz[qQ][cC]; do
Expand All @@ -42,7 +43,7 @@ jobs:
run: |
for i in $PATH_TO_EXAMPLES/*.mz[qQ][cC]; do
echo "Semantic Validation of $i"
mzQC-offline-validator $i
mzqc-validator $i
if [ $? -ne 0 ]; then
echo "Failed to validate $i"
exit 1
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