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a2ray committed Oct 30, 2024
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{"documenter":{"julia_version":"1.9.4","generation_timestamp":"2024-10-30T04:59:22","documenter_version":"1.7.0"}}
{"documenter":{"julia_version":"1.9.4","generation_timestamp":"2024-10-30T23:20:35","documenter_version":"1.7.0"}}
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rmprocs(workers())
exit()</code></pre><p>Run the code after loading the intel-mpi module you have linked MPI.jl against with </p><pre><code class="nohighlight hljs">module load intel-mpi/2021.10.0
mpirun -np 3 julia mpitest.jl</code></pre><p>and you should see output like:</p><pre><code class="nohighlight hljs">[ Info: size is 3
[ Info: there are 2 workers</code></pre><p>This is the basic recipe for all the cluster HiQGA jobs on NCI. After the call to <code>manager = MPIClusterManagers.start_main_loop(MPI_TRANSPORT_ALL)</code>, standard MPI execution stops, and we return to an explicit manager-worker mode with code execution only continuing on the manager which is Julia process 1.</p><p>The next time you start julia you have HiQGA ready for use with</p><pre><code class="nohighlight hljs">julia&gt; using HiQGA</code></pre><p>navigate to the <a href="https://github.com/GeoscienceAustralia/HiQGA.jl/tree/master/examples">examples</a> folder to run some example scripts. <strong>You can end here as a regular user, however for development mode see below.</strong></p><h2 id="For-installing-development-mode-pre-release-versions"><a class="docs-heading-anchor" href="#For-installing-development-mode-pre-release-versions">For installing development mode pre-release versions</a><a id="For-installing-development-mode-pre-release-versions-1"></a><a class="docs-heading-anchor-permalink" href="#For-installing-development-mode-pre-release-versions" title="Permalink"></a></h2><pre><code class="nohighlight hljs">pkg&gt; dev HiQGA</code></pre><p><strong>Make a pull request if you wish to submit your change – we welcome feature additions</strong>. If you want to switch back to the official version from development mode, do</p><pre><code class="nohighlight hljs">pkg&gt; free HiQGA</code></pre><h2 id="References-for-AEM-and-CSEM-physics"><a class="docs-heading-anchor" href="#References-for-AEM-and-CSEM-physics">References for AEM and CSEM physics</a><a id="References-for-AEM-and-CSEM-physics-1"></a><a class="docs-heading-anchor-permalink" href="#References-for-AEM-and-CSEM-physics" title="Permalink"></a></h2><ul><li><a href="https://doi.org/10.1093/gji/ggy255">Blatter, D., Key, K., Ray, A., Foley, N., Tulaczyk, S., &amp; Auken, E. (2018). Trans-dimensional Bayesian inversion of airborne transient EM data from Taylor Glacier, Antarctica. Geophysical Journal International, 214(3)</a></li><li><a href="https://openresearch-repository.anu.edu.au/bitstream/1885/49403/4/02Whole.pdf">Brodie, R. C. (2010). Holistic inversion of airborne electromagnetic data. PhD thesis, Australian National University</a>.</li><li><a href="https://doi.org/10.1111/j.1365-246X.2012.05677.x">Ray, A., &amp; Key, K. (2012). Bayesian inversion of marine CSEM data with a trans-dimensional self parametrizing algorithm. Geophysical Journal International, 191(3), 1135-1151.</a></li></ul></article><nav class="docs-footer"><p class="footer-message">Powered by <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> and the <a href="https://julialang.org/">Julia Programming Language</a>.</p></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label><div class="select"><select id="documenter-themepicker"><option value="auto">Automatic (OS)</option><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option><option value="catppuccin-latte">catppuccin-latte</option><option value="catppuccin-frappe">catppuccin-frappe</option><option value="catppuccin-macchiato">catppuccin-macchiato</option><option value="catppuccin-mocha">catppuccin-mocha</option></select></div></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> version 1.7.0 on <span class="colophon-date" title="Wednesday 30 October 2024 04:59">Wednesday 30 October 2024</span>. Using Julia version 1.9.4.</p></section><footer class="modal-card-foot"></footer></div></div></div></body></html>
[ Info: there are 2 workers</code></pre><p>This is the basic recipe for all the cluster HiQGA jobs on NCI. After the call to <code>manager = MPIClusterManagers.start_main_loop(MPI_TRANSPORT_ALL)</code>, standard MPI execution stops, and we return to an explicit manager-worker mode with code execution only continuing on the manager which is Julia process 1.</p><p>The next time you start julia you have HiQGA ready for use with</p><pre><code class="nohighlight hljs">julia&gt; using HiQGA</code></pre><p>navigate to the <a href="https://github.com/GeoscienceAustralia/HiQGA.jl/tree/master/examples">examples</a> folder to run some example scripts. <strong>You can end here as a regular user, however for development mode see below.</strong></p><h2 id="For-installing-development-mode-pre-release-versions"><a class="docs-heading-anchor" href="#For-installing-development-mode-pre-release-versions">For installing development mode pre-release versions</a><a id="For-installing-development-mode-pre-release-versions-1"></a><a class="docs-heading-anchor-permalink" href="#For-installing-development-mode-pre-release-versions" title="Permalink"></a></h2><pre><code class="nohighlight hljs">pkg&gt; dev HiQGA</code></pre><p><strong>Make a pull request if you wish to submit your change – we welcome feature additions</strong>. If you want to switch back to the official version from development mode, do</p><pre><code class="nohighlight hljs">pkg&gt; free HiQGA</code></pre><h2 id="References-for-AEM-and-CSEM-physics"><a class="docs-heading-anchor" href="#References-for-AEM-and-CSEM-physics">References for AEM and CSEM physics</a><a id="References-for-AEM-and-CSEM-physics-1"></a><a class="docs-heading-anchor-permalink" href="#References-for-AEM-and-CSEM-physics" title="Permalink"></a></h2><ul><li><a href="https://doi.org/10.1093/gji/ggy255">Blatter, D., Key, K., Ray, A., Foley, N., Tulaczyk, S., &amp; Auken, E. (2018). Trans-dimensional Bayesian inversion of airborne transient EM data from Taylor Glacier, Antarctica. Geophysical Journal International, 214(3)</a></li><li><a href="https://openresearch-repository.anu.edu.au/bitstream/1885/49403/4/02Whole.pdf">Brodie, R. C. (2010). Holistic inversion of airborne electromagnetic data. PhD thesis, Australian National University</a>.</li><li><a href="https://doi.org/10.1111/j.1365-246X.2012.05677.x">Ray, A., &amp; Key, K. (2012). Bayesian inversion of marine CSEM data with a trans-dimensional self parametrizing algorithm. Geophysical Journal International, 191(3), 1135-1151.</a></li></ul></article><nav class="docs-footer"><p class="footer-message">Powered by <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> and the <a href="https://julialang.org/">Julia Programming Language</a>.</p></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label><div class="select"><select id="documenter-themepicker"><option value="auto">Automatic (OS)</option><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option><option value="catppuccin-latte">catppuccin-latte</option><option value="catppuccin-frappe">catppuccin-frappe</option><option value="catppuccin-macchiato">catppuccin-macchiato</option><option value="catppuccin-mocha">catppuccin-mocha</option></select></div></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> version 1.7.0 on <span class="colophon-date" title="Wednesday 30 October 2024 23:20">Wednesday 30 October 2024</span>. Using Julia version 1.9.4.</p></section><footer class="modal-card-foot"></footer></div></div></div></body></html>

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