Code

feat: initial VRS mapping draft#5

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Merged

jsstevenson merged 30 commits intomainGenomicMedLab/dcd_mapping:mainfrom vrsGenomicMedLab/dcd_mapping:vrsCopy head branch name to clipboardJan 15, 2024

+1,819-499

Commits

Commits on Nov 5, 2023

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Commits on Dec 28, 2023

• update ruff

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Commits on Dec 29, 2023

• Update formatting

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Commits on Dec 31, 2023

• Add rewrite progress

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  477e26b

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• More progress ??

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  0559d81

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• More bug squashing

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  e66aa22

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Commits on Jan 1, 2024

• update progress

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  4956f98

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Commits on Jan 2, 2024

• progress

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  266880b

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• more align tests

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Commits on Jan 5, 2024

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• resolve deprecation warning

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  7f54810

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• update tests

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  7fabee3

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Commits on Jan 6, 2024

• more work

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Commits on Jan 7, 2024

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  862a659

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• Add silent param to ref genome download

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Commits on Jan 8, 2024

• update tx select, update fixtures

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  a029a3a

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• cleanup

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  bb6eae3

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• Add remainign transcripts stuff

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  e5f2e28

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• update tests

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  2ca51d2

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Commits on Jan 10, 2024

• enable caching for blat output

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  b374f44

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Commits on Jan 11, 2024

• Move around

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  dc09054

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• Define VRS method output structure

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• Add usage/basic dev instructions

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  42f4d4d

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• constrain imports

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  2b8e879

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• remove todo

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  fd7890d

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• Add TODO's

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  7688a52

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• Add logging for uncrecognized transcript priority

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  6fa532f

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Commits on Jan 15, 2024

• Add remaining VRS draft

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