v1.1.0

What's Changed

• Docs for cased wellbore with Thermal debonding by @sytuannguyen in #2515
• updated integratedTests submodule by @tbeltzun in #2778
• Adding an error when input temperature / pressure is out of PVT tables range by @MelReyCG in #2552
• A review of the docs for solid constitutive models by @sytuannguyen in #2606
• Solve reappearing compilation issue on PPC machines with NVCC due to FMT bug by @sframba in #2759
• prevent SIGFPE in vtk by @tbeltzun in #2718
• Reenabling sphinx imgmath by @cssherman in #2780
• Tune the hydrofrac example so that it at least runs by @paveltomin in #2763
• Fix integratedTests failures. by @CusiniM in #2785
• Refactor fluid unit tests by @dkachuma in #2695
• Compositional tidy up by @dkachuma in #2661
• Add gcc compiler to nightly tests by @bmhan12 in #2692
• Add a few solver options plus some useful output for hydrofrac solver by @paveltomin in #2762
• Allow negative pressure by default (revert change from #2762) by @paveltomin in #2787
• Merge SolidMechanicsStateReset into PoromechanicsInitialization to simplify users life by @paveltomin in #2735
• Update TPL tag to point back to the HEAD of the repo by @TotoGaz in #2791
• Activate sccache in the CI/CD by @TotoGaz in #2760
• Add more context to errors - mesh/ files by @MelReyCG in #2450
• Re-Enable anisotropic constitutive models by @sytuannguyen in #2749
• Some formulation options by @paveltomin in #2546
• rewrite seismo traces - rework WaveSolverBase structure by @tbeltzun in #2729
• Remove unused variables by @dkachuma in #2797
• Add phase composition to PVTDriver output by @dkachuma in #2772
• Create compositional multiphase fluid by @dkachuma in #2769
• Bugfix/crook5/mpm restart by @cmcrook5 in #2782
• Support wells in sequential poromechanics + 3 other PRs by @paveltomin in #2568
• Fixes and enhancements to frac permeability models by @CusiniM in #2757
• Reorganization of the GHA files by @TotoGaz in #2801
• Well skin factor by @kimtaeho07 in #2599
• Upgrade version of sccache for GPU builds by @TotoGaz in #2829
• Feature in-tree external components by @untereiner in #2527
• allow empty source and receivers by @tbeltzun in #2818
• MGR strategies cleanup by @castelletto1 in #2409
• Use ComponentProperties in calculation functions by @dkachuma in #2799
• add NDEBUG test - add build_test target - fix asserts by @tbeltzun in #2721
• More precise XML input values validation by @MelReyCG in #2764
• Bugfix/castelletto1/mgr by @castelletto1 in #2855
• Fix integratedTests fails. by @CusiniM in #2864
• add missing baselines updates by @rrsettgast in #2865
• Update logLevel usage in MGR by @victorapm in #2815
• Dissipation by @rasimHZ in #2660
• Bugfix: remove table path from restart files. by @CusiniM in #2869
• Run the integrated tests on GHA by @TotoGaz in #2850
• Redid ArrayOfArraysView::setCapacityOfArray to avoid move by @corbett5 in #2870
• Use GHA's if: instead of dedicated jobs by @TotoGaz in #2872
• A few solver messages rework by @MelReyCG in #2783
• Implement STONE II model for three phase relperm interpolation by @jafranc in #2525
• Simple fixes for issues #2834 and #2839 by @paveltomin in #2841
• Properly reactivate PVT throwing by @MelReyCG in #2798
• A few mesh messages edit by @MelReyCG in #2844
• Fix Issue #2833 and #2755 by @jhuang2601 in #2859
• Remove value only compute method from fluid models by @dkachuma in #2802
• Enhance the fracture generation feature of mesh_doctor by @TotoGaz in #2793
• Updating error checking in python setup script by @cssherman in #2825
• Disable auto updating of docs/doxygen/GeosxConfig.hpp by @klevzoff in #2602
• Cleanup compositional fluid model by @dkachuma in #2812
• IO: filter mesh levels for VTK by @tbeltzun in #2723
• Fixes for brine density computes, output internally constructed PVT tables for CO2 fluid into CSV files by @paveltomin in #2792
• Fix issues #2837 and #2838 by @paveltomin in #2843
• Address the issue #2407 by @sytuannguyen in #2809
• Fix issue #2882 by using output dir in wells rates output by @paveltomin in #2884
• fix elastic seismos bug by @tbeltzun in #2849
• SourceFlux & RegionStatistics crash fixes by @MelReyCG in #2842
• Fix Rachford-Rice solver by @dkachuma in #2854
• Fix minCompDens by @victorapm in #2889
• Gitlab CI - cleanup untracked files by @bmhan12 in #2892
• Computing next time-step size from CFL by @jafranc in #2600
• Aitken relaxation on averageMeanTotalStressIncrement by @sohailwaziri in #2628
• Revert target region check accidentally commented in #2568 by @paveltomin in #2893
• Simulation duration output fix + timestep separator by @MelReyCG in #2877
• RAJA loop_exec deprecated for seq_exec by @wrtobin in #2890
• Define a single quadrature point for FaceElements by @CusiniM in #2784
• Include water vapourisation in CO2/Brine flash by @dkachuma in #2811
• Time step cut support for sequential solver by @paveltomin in #2861
• acoustic - elastic coupling (SEM, 2ⁿᵈ order wave equation) by @tbeltzun in #2813
• Fix issue #2871 by @paveltomin in #2916
• Poromechanics solvers cleanup by @paveltomin in #2913
• fix multiple tutorial problems by @jhuang2601 in #2920
• Some random flow solver cleanup by @paveltomin in #2921
• Correct errors in wave propagation xml files by @sframba in #2911
• Fix a typo in Example2.rst by @sytuannguyen in #2931
• Fix compilation issues and PVT Driver unit test on Pangea3 by @sframba in #2910
• Updating paths to data repo by @castelletto1 in #2934
• Fix function interface for poroVisoPlastic models by @jhuang2601 in #2696
• Fix the naming of the fluid heat capacity by @frankfeifan in #2924
• generate code coverage reports by @tbeltzun in #2738
• Add action trigger for push to develop by @rrsettgast in #2943
• Migrate python packages by @cssherman in #2896
• Apply min comp dens treatment for initial conditions by @paveltomin in #2938
• More single phase outputs by @MelReyCG in #2904
• Poroelastic frac propagation criterion: use total stress to compute force balance. by @CusiniM in #2706
• Add csv output also for singe phase flow and unify a bit between different statistics outputs by @paveltomin in #2914
• Fix for black oil by @paveltomin in #2937
• Misc cleanup of CI and README by @rrsettgast in #2944
• Use LvArray::math functions by @untereiner in #2927
• Spack Update by @bmhan12 in #2028
• find bug with ci tests on develop by @rrsettgast in #2948
• Run cuda jobs for develop CI by @rrsettgast in #2949
• add workflow_dispatch option to actions by @rrsettgast in #2951
• 2nd attempt to fix develop CI runs by @rrsettgast in #2950
• Make useSimpleAccumulation=1 default for isothermal by @paveltomin in #2942
• Add log for opened deck filepath by @arng40 in #2932
• Fix the black oil case by tightening the nonlinear tolerance by @paveltomin in #2955
• Add a VTK well import by @untereiner in #2551
• Improve SinglePhasePoromechanicsEmbeddedFractures and introduce SinglePhasePoromechanicsConformingFractures MGR strategy by @victorapm in #2747
• Use output dir (option "-o") for printing out PVT tables by @paveltomin in #2946
• Update LvArray by @TotoGaz in #2956
• Improve linear solver for compositional flow runs by @victorapm in #2928
• Add HYPRE warning by @victorapm in #2907
• Optimization of higher-order Gauss-Lobatto kernels by @sframba in #2894
• Print Hypre preconditioner setup error by @paveltomin in #2935
• Change code coverage CI VM to 4 core - 16 GB by @rrsettgast in #2978
• Activate water vapourisation table by @dkachuma in #2941
• Contact mechanics (conforming) input files by @castelletto1 in #2970
• use streak.llnl.gov as runner for GHA by @rrsettgast in #2873
• Adding strain integration option for DAS measurement in the elastic wave propagator by @sframba in #2612
• add pragmas to supress warnings associated with compiler bugs by @rrsettgast in #2983
• Fix guards for gcc warning pragmas by @rrsettgast in #2986
• Make possible to provide input PVT tables instead of internally computed by @paveltomin in #2919
• Out of place ATS by @cssherman in #2964
• Implement Quasi-Newton for HF problems by @CusiniM in #2541
• Refactor wave solver files: Split field namespace for each physics by @acitrain in #2947
• Adding Sherlock GPU to CI tests by @matteofrigo5 in #2977
• Do two equal time steps instead of one big one small by @paveltomin in #2987
• Fix typo causing nuerical instability with Elastic Wave propagator by @sframba in #2990
• Solution increments convergence criteria for sequential solver by @paveltomin in #2866
• Refactor contact solvers using inheritance from a SolidMechanics solver by @paveltomin in #2967
• Remove rock from fracture materialList in HydrofractureSolver by @paveltomin in #2994
• Update bulk (mixture) density after mechanics sequential solve by @paveltomin in #2875
• Regions for sequential poromechanics solver by @paveltomin in #2897
• Uniaxial in fixed stress by @paveltomin in #2906
• injection example fix by @arng40 in #2933
• Support sequential in SinglePhasePoromechanicsConformingFractures by @paveltomin in #3007
• Bugfix: min vs lowest by @joshua-white in #3034
• Get cpu integrated tests running on streak. by @rrsettgast in #2991
• Load pretty printers for LvArray in codespace by @TotoGaz in #3022
• Correct METIS version by @dkachuma in #3028
• Remove wrong zero diag check by @paveltomin in #3033
• Fixes spikes when importing fractures in parallel by @TotoGaz in #3020
• Optimization of the construction of high-order mesh maps by @sframba in #2731
• Fix "status 137" error on streak by @rrsettgast in #3042
• Allow building GEOS with clang >= 15 by @tbeltzun in #3024
• Implement Spycher-Pruess solubility tables by @dkachuma in #2820
• Make dependabot watch github-actions updates by @untereiner in #2962
• Reassess include of the mesh generators by @TotoGaz in #3038
• Implementing hybrid upwinding for total velocity schemes by @jafranc in #2394
• Replace result_of of invoke_result to fix macOS compilation. by @CusiniM in #3046
• Modifying rst table type names by @cssherman in #3040
• Node/cell ordering in InternalMesh by @castelletto1 in #2881
• Initialization of fields in new fracture cells in HydroFracture solver by @frankfeifan in #2960
• Small fix in SinglePhasePoromechanicsConformingFractures MGR strategy by @paveltomin in #3047
• Fix solubility message by @dkachuma in #3048
• Refactor wave solvers: separation of time and space update inside wave solvers by @acitrain in #2989
• documentation for VTKWell by @untereiner in #2963
• acoustic / elastic solver updates by @tbeltzun in #3027
• Refactor wave solvers: move mass + damping matrix and PML inside dedicated files by @acitrain in #2995
• Refactor wave solvers: Move sources and receivers routine inside a dedicated file by @acitrain in #3032
• Minor include cleanup for flow solvers by @paveltomin in #3064
• PVT & TPL error message rewrite by @MelReyCG in #2929
• Fix broken compilation on Pangea3 by @sframba in #3070
• Make sequential poromechanics to conserve mass by @paveltomin in #2952
• Freeze porosity when doing poromechanics initialization by @paveltomin in #3056
• update tpls tag and lvarray. by @CusiniM in #3087
• Simplify poromechanics initialization setup by @paveltomin in #3058
• Unify convergence check for lagrange-contact solvers by @paveltomin in #3049
• Update default hypre parameters by @victorapm in #3066
• fix blas lapack links for tests by @herve-gross in #2685
• specify self hosted runner labels explicitly by @rrsettgast in #3097
• Small clean up for SinglePhasePoromechanicsEmbeddedFractures by @paveltomin in #3093
• Fix inconsistencies between serial and parallel conforming fracs run + add new output fields. by @CusiniM in #3065
• Stabilized Fixed-Stress by @ryar9534 in #3092
• Enable CI testing on streak2 by @rrsettgast in #3090
• Check that useStaticCondensation is not enabled when running SinglePhasePoromechanicsEmbeddedFractures by @paveltomin in #3099
• Neumann instead of Dirichlet boundary for 2nd order elastic wave free surface condition by @sframba in #3072
• Change Unsupported doc tag to Best effort by @TotoGaz in #3102
• Separate stick, slip, open parts of contact residual and try to normalize them properly by @paveltomin in #3059
• Refactoring wave solver: new folder organization by @acitrain in #3074
• add penalty contact for hydraulic fracturing in poroelastic materials. by @Guotong-Ren in #3096
• Make optional builds re-runnable on CI by @ryar9534 in #3094
• Link compositional fluid model to static function implementation by @dkachuma in #2879
• Update MultiphasePoromechanics strategy by @victorapm in #3098
• Fix setMGRStrategy logic for SinglePhaseReservoirAndWells by @paveltomin in #3111
• Update integrated test baseline storage by @cssherman in #3044
• Bump the github-actions group with 3 updates by @dependabot in #3106
• Additional use of streak2 for CI testing by @rrsettgast in #3103
• Feature/byer3/mass inj const by @tjb-ltk in #2917
• fix bug in ci script by @rrsettgast in #3115
• Bugfix/byer3/internal energy der 3053 by @tjb-ltk in #3105
• Clean up catalogName a bit by @paveltomin in #3110
• Small cleanup for flow solvers by @paveltomin in #3114
• Add a pressure-dependent permeability model and calculate the transmissibility derivatives by @frankfeifan in #3086
• Document how to debug CI through ssh. by @CusiniM in #2975
• Make integratedTests job mandatory on CI. by @CusiniM in #3118
• Feature/seismicity rate solver by @kimtaeho07 in #2593
• Elastic Vertical Transverse Isotropic (VTI) wave solver implementation by @acitrain in #3060
• Add the function to update the pressure gradient in the hybrid solver by @frankfeifan in #2110
• Fix missing const for int conversion of CommID by @TotoGaz in #3122
• Upgrade the version of plantuml by @TotoGaz in #3124
• Change uberenv repo to relative path by @rrsettgast in #3127
• Register pressureGradient only for hybrid FVM (single phase) by @paveltomin in #3125
• Modified label used to run cuda jobs by @CusiniM in #3131
• Store baselines locally on streak2. by @CusiniM in #3141
• Spatially-varying grain bulk modulus within a region. by @CusiniM in #3050
• Fix bug when we take minTime < 0 in wave solvers by @acitrain in #3158
• Log refactor - Table logging features by @arng40 in #2984
• add stress initialization for hydrofracture solver by @Guotong-Ren in #3150
• Activate fluid models by @dkachuma in #3123
• Add the command for running uncrustify style to the Doc by @sytuannguyen in #3151
• Fix updateConfiguration by @paveltomin in #3113
• Add missing tests into ATS and adjust output naming by @paveltomin in #3120
• Introduce configuration tolerance by @paveltomin in #3075
• Compilation failure on pangea-3 if ENABLE_CUDA is OFF by @Algiane in #3129
• Viscoelastic wave propagator by @sframba in #3080
• Break up multi fluid test by @dkachuma in #3140
• Properly sync nonlinear solver params for coupled solver by @paveltomin in #3138
• remove RESQML support from GEOS by @untereiner in #2969
• Some random things by @paveltomin in #3152
• Only consider 3d cells in fracture to matrix mappings by @TotoGaz in #2887
• Add Pangea4 host configs by @Bubusch in #3081
• run integrated tests on dedicated runner to avoid overloading of streak2 by @rrsettgast in #3171
• Preparatory work for fractures + wells by @paveltomin in #3021
• Adding SourceFluxStatistics by @MelReyCG in #2954
• Allow extra parameters for fluid models by @dkachuma in #3157
• Force face-based ordering for node list of FaceElements by @CusiniM in #3133
• Adding pressure stabilization for single phase poromechanics by @ryar9534 in #3100
• Add linear solver params table output by @paveltomin in #3164
• Implement Temperature-dependent Solid Volumetric Heat Capacity by @sytuannguyen in #3088
• Small bug fix by @paveltomin in #3165
• Code cleanup by @paveltomin in #3168
• Two experimental options for compositional flow solver by @paveltomin in #3160
• Augmented Lagrangian (stick mode) - InterfaceKernelBase - Bubble Functions by @matteofrigo5 in #3130
• Remove integratedTests as a submodule for codespaces by @TotoGaz in #3176
• Fix tutorial example for thermal debonding wellbore problem by @jhuang2601 in #3170
• Adding field to output total strain by @ryar9534 in #3142
• Python Packaging Updates by @untereiner in #3057
• update LvArray for adding freeOnDevice() function by @rrsettgast in #3183
• Replace paid runners with streak2 by @rrsettgast in #3184
• Fix unit tests on GPU CI platform. by @rrsettgast in #2985
• Bump the github-actions group across 1 directory with 3 updates by @dependabot in #3186
• Decouple debug matrix output from logLevel by @paveltomin in #3181
• Implement stability test by @dkachuma in #3136
• Extend BLAS interface by @dkachuma in #3173
• Fix #3146 - Error in stat reduction for Function triggered PeriodicEvent by @jafranc in #3147
• HDF5 Collective Operations Flags by @wrtobin in #3177
• Bugfix/fix issue 2853 with flag by @rrsettgast in #3196
• Fix compilation warnings. by @CusiniM in #3190
• Update rst files and schema by @paveltomin in #3195
• style: Rename postProcessInput > postInputInitialization by @wrtobin in #3198
• Implemented face-based lagrange contact solver with VEM by @IsaacJu-debug in #3006
• Remove array1d inside kernels by @rrsettgast in #3201
• Umpire logs refactor - table output + adding percentages by @arng40 in #3052
• Host configs for new LLNL machines + cuda12 by @victorapm in #3067
• update LvArray submodule hash by @rrsettgast in #3208
• Remove EOS template parameter from compositional fluid model by @dkachuma in #3166
• Disable generation of globalIDs in GEOS for fracture meshes by @ryar9534 in #3200
• Remove unnecessary constitutiveUpdatePassThru by @dkachuma in #3204
• docs: Fixing python scripts in tutorials by @castelletto1 in #3211
• ci: Check that PR title follows conventional commit prefix by @untereiner in #3043
• fix: Check for existence of_ SC_AVPHYS_PAGES to fix MacOS compilation. by @CusiniM in #3207
• feat: enable CODEOWNERS by @rrsettgast in #3205
• fix: Use aperture table in poromechanics with conforming fractures by @paveltomin in #3194
• chore: update trilinos, hypre and fmt. by @CusiniM in #3214
• docs: Update the documentation with conventional commit prefixes by @untereiner in #3220
• docs: update publications by @jhuang2601 in #3216
• fix: Bugfix/semantic pull request fix by @rrsettgast in #3221
• fix: another shot to fix workflow by @untereiner in #3225
• chore: Update blt, RAJA, CHAI, Caliper, adiak, conduit by @rrsettgast in #3218
• chore: Change GEOSX to GEOS in a bunch of places by @rrsettgast in #3219
• refactor: Add component selector for fluid models by @dkachuma in #3213
• ci: Update CODEOWNERS by @rrsettgast in #3240
• refactor: Towards modularization of physicsSolver by @rrsettgast in #3239
• feat: Check pore volume for all element types by @paveltomin in #3233
• refactor: fix creation of mass handling. by @CusiniM in #3215
• docs: Fix wrong variable names in doc after PR #3219 (GEOSX_ -> GEOS_). by @Algiane in #3242
• fix: Fix link flags after pr#3219 by @Algiane in #3244
• chore: Add myself to constitutive by @paveltomin in #3238
• feat: Add partition information to terminal output by @rrsettgast in #3246
• refactor: change MPI_COMM_GEOSX to MPI_COMM_GEOS everywhere by @rrsettgast in #3259
• chore: Update hypre by @CusiniM in #3261
• fix: Fix segfault in table by @rrsettgast in #3268
• fix: robust point location for degenerate configurations by @sframba in #3202
• refactor: Remove circular dependencies from fileIO/common/codingutilities by @MelReyCG in #3247
• fix: testUnits failure on MacOS by @rrsettgast in #3269
• feat: Transmissibility output by @MelReyCG in #3091
• fix: fix linking error on mac by @rrsettgast in #3270
• refactor: separate friction and hydraulic aperture - stress relation. by @CusiniM in #3197
• fix: Fix cibadge in Readme. by @CusiniM in #3265
• fix: Update LvArray submodule by @CusiniM in #3277
• refactor: Remove "using namespace" in header files by @rrsettgast in #3255
• docs: change GEOSX to GEOS in documentation by @rrsettgast in #3275
• chore: Changing GEOSX to GEOS in external mesh import by @ryar9534 in #3278
• docs: stress_and_pressure_initialization by @Oluwatobi-PM in #3249
• chore: add a few comments and small code fixes in addTransmissibilityCouplingPattern for poromechanics with conforming fractures by @ryar9534 in #3250
• build: Remove remaining circular link dependencies by @rrsettgast in #3282
• docs: fix python script for a tutorial example by @jhuang2601 in #3284
• refactor: Reuse computeSinglePhaseFlux by @paveltomin in #3283
• refactor: Use matrix-matrix interface in LAPACK solve by @dkachuma in #3234
• feat: Use stability test in flash by @dkachuma in #3206
• feat: Add kernel callable dense LA solvers for small systems. by @CusiniM in #3287
• feat: add log at the end of the timestep with substeps info. by @CusiniM in #3303
• fix: add install commands to component libraries by @rrsettgast in #3307
• fix: reenable floating point exceptions by @rrsettgast in #3300
• feat: Add immiscible water flash model by @dkachuma in #3237
• docs: Update COPYRIGHT by @herve-gross in #3317
• docs: apply suggestions from joss review by @CusiniM in #3296
• docs: update publications and fix a link by @jhuang2601 in #3304
• fix: Bug with elastic wave propagator at higher orders by @sframba in #3294
• fix: Small fix by @paveltomin in #3308
• feat: Temperature dependent single phase thermal conductivity by @sytuannguyen in #3135
• fix: Fix restart issue when running HydroFracture cases. by @frankfeifan in #3302
• fix: Add some initialisation to class members by @dkachuma in #3323
• chore: update codeowners for integrated_tests.yaml by @CusiniM in #3333
• feat: print out fracture state for contact model by @jhuang2601 in #3322
• docs: edits from joss review by @rrsettgast in #3332
• fix: update schema docs from previous PR's that forgot to generate the updates by @rrsettgast in #3341
• chore: Update quick-start-template.cmake by @paveltomin in #3326
• chore: increase minimum required cmake version. by @CusiniM in #3331
• ci: Disable trigger of ci jobs when description is edited by @rrsettgast in #3346
• fix: Check for zero permeability in J-function cap pressure by @paveltomin in #3320
• fix: Fix the sphinx errors present in the readthedocs log by @rrsettgast in #3343
• fix: fix rockylinux jobs and activate them. by @CusiniM in #3336
• ci: add the possitility to use other build generators than ninja inside the ci by @Algiane in #3276
• fix: modify and reactivate SeismicityRate poroelastic integrated test. by @CusiniM in #3318
• docs: avoid offline documentation generation by @rrsettgast in #3350
• docs: Generating sphinx datastructure tables on the fly by @cssherman in #3344
• docs: replace the word explosion with seismic charge by @rrsettgast in #3354
• ci: Time-saving version of PR #3159 that adds Pangea3 job with ppc emulation by @Algiane in #3340
• docs: scripts for user/commit stats by @rrsettgast in #3357

New Contributors

• @kimtaeho07 made their first contribution in #2599
• @rasimHZ made their first contribution in #2660
• @arng40 made their first contribution in #2932
• @matteofrigo5 made their first contribution in #2977
• @Guotong-Ren made their first contribution in #3096
• @dependabot made their first contribution in #3106
• @tjb-ltk made their first contribution in #2917
• @Algiane made their first contribution in #3129
• @Bubusch made their first contribution in #3081
• @Oluwatobi-PM made their first contribution in #3249

Full Changelog: v1.0.1...v1.1.0