v0.2.1-alpha

This is a pre-release created for the purpose of generating a DOI

What's Changed

• Fix potential difference calculations in molar variables by @francoishamon in #1228
• Unit testing on Lassen - Laplace2D with serial direct solver by @castelletto1 in #1239
• Compile mathpresso targets iff mathpresso option is requested. by @TotoGaz in #1246
• Improving lagrangian contact mechanics solver + LAI capabilities by @andrea-franceschini in #986
• change workflow documentation by @rrsettgast in #1244
• Provide docker solution to docker restriction by @TotoGaz in #1247
• Adding an mesh tools python package for GEOSX by @cssherman in #1224
• Improvements to EFEM solver. by @CusiniM in #1147
• LC Spack Support by @corbett5 in #1204
• Fixed bug in averageOverSecondDim with 1D arrays. by @corbett5 in #1250
• Implemented dispatch for mimetic inner product selection by @francoishamon in #1190
• WIP - Add Debug CUDA build to Travis CI by @bmhan12 in #1252
• Updates to Phase-Field Fracture - Stress Decomposition and Nonlinear Degradation Functions by @andrembcosta in #1144
• config-build works with Python3 by @corbett5 in #1251
• Fixed bug related to matching perforations to reservoir elements by @francoishamon in #1206
• Fixed bug linking to system tpls. by @corbett5 in #1265
• Fix missing blob on GCP by @TotoGaz in #1276
• Virtual Element Method by @andrea-borio in #1220
• Travis Cuda Clang Debug Build by @bmhan12 in #1270
• Fixing wrong buffer in test. by @TotoGaz in #1281
• Re-enable pinned memory. by @corbett5 in #1283
• Update Hypre and CHAI TPLs by @rrsettgast in #1282
• Fix to default destructor missing by @herve-gross in #1268
• Correct a typo: sparisty by @sytuannguyen in #1271
• Using clang-tidy to correct legacy namings by @TotoGaz in #1286
• Removed Doxygen warnings on Quartz by @francoishamon in #1293
• Minor cameBack correction by @TotoGaz in #1294
• fix incorrectly reverted LvArray submodule by @rrsettgast in #1295
• Bugfix/sytuan/pangea build by @sytuannguyen in #1253
• Remove redundant member variables in LaplaceFEM solver by @sytuannguyen in #1298
• Apply renaming to function calls from Petsc LAI by @klevzoff in #1300
• Fix to boundedPlane to avoid missing some embedded elements. by @CusiniM in #1304
• Replace std::string with string by @rrsettgast in #1301
• Updating publications.rst by @joshua-white in #1287
• Fixed crash in SinglePhaseFVM with wells and fractures by @francoishamon in #1306
• Apply renaming to update functions in CompositionalMultiphaseFlowKernels by @francoishamon in #1310
• Modified well controls to match Intersect results by @francoishamon in #1202
• Update TPL by @TotoGaz in #1314
• Update TPL by @TotoGaz in #1315
• Update submodule BLT to v0.3.6 by @TotoGaz in #1316
• Improve logs when product is not found in catalog. by @TotoGaz in #1305
• Python interface by @corbett5 in #1068
• Poroelasticity with embedded fractures by @CusiniM in #1229
• Adding Drucker-Prager plasticity model by @joshua-white in #974
• Implement relative permeabilities with tables on device by @francoishamon in #1277
• Corbett/references and exceptions by @corbett5 in #1318
• Add hybrid FVM compositional multiphase solver by @francoishamon in #901
• Updated Build Guide by @klevzoff in #1332
• Fix Debug-build compile fail on Lassen by @wrtobin in #1337
• Update CO2-brine model documentation by @francoishamon in #1330
• Enable uncrustify for Pangea by @sytuannguyen in #1339
• Fixed bug in the computation of the Peaceman index by @francoishamon in #1341
• Re-enable Doxygen on Travis and fix existing warnings by @klevzoff in #1345
• Update Caliper.rst by @corbett5 in #1346
• Process external components after core components. by @corbett5 in #1347
• Fix VTK output to put plot files under output path by @klevzoff in #1343
• boomerAMG on GPU for SolidMechanicsLagrangianSSLE by @castelletto1 in #1054
• Implemented Dead-Oil model working on device by @francoishamon in #1313
• Adding asyncronous kernel launching and restructuring the CommunicationTools routines to expose more async to allow for latency hiding by @wrtobin in #1319
• update TPLs for Pangea build by @sytuannguyen in #1358
• Kernels for poroelastic solvers by @castelletto1 in #1353
• Implement CO2Brine model on GPU by @francoishamon in #1325
• Small fixes to tutorials. by @CusiniM in #1365
• Changes for Summit. by @corbett5 in #1367
• Fixed debug compilation on Lassen by @francoishamon in #1368
• Removing dead code + tiny cleanings by @TotoGaz in #1373
• Reducing visibility of neighborRank in NeighborCommunicator by @TotoGaz in #1375
• Low order acoustic wave equation by @mndiaye24 in #1269
• Feature/borio/vem refactoring by @andrea-borio in #1288
• Fixed compilation warning with clang+hypreGPU on Lassen by @francoishamon in #1380
• WIP - circular dependencies / object libraries build by @bmhan12 in #1352
• Linear algebra cleanup by @klevzoff in #1363
• Update Caliper.rst by @corbett5 in #1391
• PVTPackage and PAMELA submodule names by @rrsettgast in #1396
• Bugfixes for CUDA build (multiphase model kernel wrappers, HypreVector::extract) by @klevzoff in #1397
• Device Packing Optimization by @wrtobin in #1382
• Update host config to resolve Pangea build issue by @sytuannguyen in #1395
• Fix silo output issue #1186 by @sytuannguyen in #1400
• Bugfix/hypre lai by @castelletto1 in #1403
• Parallel synchronization of new embedded surfaces. by @CusiniM in #1354
• Wrong cast in PTP by @TotoGaz in #1404
• Feature/wellbore mesh, Traction BC, convert {tensor input} by @rrsettgast in #1393
• add missing internal wellbore mesh integrated test baselines by @rrsettgast in #1406
• Adding a script to test for xml attribute coverage by @cssherman in #1102
• Adding timestamp information required by visit to vtk files by @cssherman in #1407
• Add LaplaceBase class by @andrea-borio in #1385
• Add pygeosx_tools python package by @cssherman in #1362
• Triaxial Driver by @joshua-white in #1364
• Cleanup of NeighborCommunicator by @rrsettgast in #1414
• LvArray update. by @corbett5 in #1410
• Changed how the finite element kernel objects are constructed. by @corbett5 in #1340
• DofManager cleanup by @klevzoff in #1412
• Cleanup TractionBoundaryCondition by @klevzoff in #1426
• Corbett/hypre cuda fix by @corbett5 in #1441
• Adds support for hypre-cuda via spack. by @corbett5 in #1445
• Fixed bug in compositional residual norm calculation with multiple regions by @francoishamon in #1458
• Consistify temperature units for CO2-brine input by @francoishamon in #1459
• Fixed the bug related to underscores in PAMELA region/surface names by @francoishamon in #1460
• Mgr cleanup + Poromechanics solvers cleanup by @castelletto1 in #1401
• Fix Wedge node ordering by @AntoineMazuyer in #1454
• Improved well error/warning messages by @francoishamon in #1472
• Output 4D fields in VTK by @francoishamon in #1464
• Fix bugs and add unit tests for ComponentMask by @klevzoff in #1473
• Implemented MGR recipes for flow solvers (hybrid FVM, wells) by @francoishamon in #1471
• Implemented CFL numbers in compositional solver by @francoishamon in #1466
• Change multiphase array layouts for CUDA builds by @klevzoff in #1463
• Refactor VEM classes to allow computations on GPU by @andrea-borio in #1419
• VTK output improvements by @klevzoff in #1484
• Update index.rst by @sytuannguyen in #1444
• Proposal for type dispatch by @klevzoff in #1487
• Move volumeBalance to MultipahseporomechanicsKernel. by @CusiniM in #1488
• Dynamic Time History Collection by @wrtobin in #1360
• CMake build cleanup by @bmhan12 in #1433
• Specificy multiple input xml files from command line by @cssherman in #1465
• Remove static_if by @klevzoff in #1493
• Cleanup/settgast/move ptp by @rrsettgast in #1498
• Replace element type strings with enum by @klevzoff in #1499
• Force google's gsutil to use python3 by @TotoGaz in #1509
• Creation of a CoupleSolidModel to handle Poro-Solid-Damage models. by @CusiniM in #1455
• Updating tutorial step08 by @castelletto1 in #1511
• Consider confining stress on SIF calculation and fracture propagation by @WuHuiLLNL in #1486
• Moved resizeFields to registerDataOnMesh in compositional solvers by @francoishamon in #1512
• Docs for Analytical Verification of Drucker-Prager Model by @jhuang2601 in #1474
• Add missing & Remove duplicated files in CMakeLists.txt by @sytuannguyen in #1490
• Add type check for coupledSolid by @CusiniM in #1518
• Fix schema generation crash + minor bugfixes by @klevzoff in #1519
• XML Redundancy Tool by @cssherman in #1497
• Add new cluster target and clean CI by @TotoGaz in #1467
• Remove unused TPLs by @klevzoff in #1527
• Changed default m_component value to -1 in FieldSpecificationBase to … by @jafranc in #1500
• Correct some XMLs by @sytuannguyen in #1526
• Remove warning by @TotoGaz in #1530
• Update solid model documentation by @joshua-white in #1329
• Refactor PAMELA field import by @klevzoff in #1532
• Docs for Solving Wellbore Problems with Poroplastic Solver by @jhuang2601 in #1475
• Fixed bug in total density for surface condition injection rate by @francoishamon in #1536
• Minor doc fixes by @jhuang2601 in #1535
• Prevent VTK counter FPE by @herve-gross in #1540
• [Docs] coupled solid documentation by @jhuang2601 in #1539
• Fix VTK crash with empty subregions by @francoishamon in #1543
• Use of CompressibleSolid - Stencils refactoring - Transmissibility update by @CusiniM in #1311
• Updated LvArray. by @corbett5 in #1551
• Implement Black-Oil model on GPU by @francoishamon in #1537
• Multiphase fluid model cleanup by @klevzoff in #1554
• Fix for reference porosity import by @klevzoff in #1557
• Elastic Orthotropic constitutive model by @sytuannguyen in #1323
• Bugfix for #1550 by @klevzoff in #1556
• Implemented time-dependent well rate and bhp tables by @tang39 in #1468
• Doc for cased wellbore problem by @sytuannguyen in #1542
• Fix #1524 by @klevzoff in #1558
• Change to TotalEnergies by @herve-gross in #1562
• Tutorial updates by @joshua-white in #1538
• Added calls to reserve in transmissibilities precomputation by @francoishamon in #1572
• Move xml files of wellbore problems to benchmark folders by @jhuang2601 in #1574
• Documentation for docker development. by @TotoGaz in #1567
• Doc for deviated elastic wellbore by @sytuannguyen in #1571
• Correct wrong markdown formatting by @TotoGaz in #1577
• Docs/castelletto1/update publications by @castelletto1 in #1578
• Add version output by @klevzoff in #1581
• Proppant solver refactoring by @francoishamon in #1559
• Improve version header generation by @klevzoff in #1583
• Projection EDFM by @CusiniM in #1565
• Add Ninja job pool limit options by @klevzoff in #1590
• Fixed negative cell volume with reverseZ on CPG by @francoishamon in #1589
• Poromechanics kernels refactoring by @castelletto1 in #1596
• Use {fmt} for message formatting by @klevzoff in #1568
• update TPL in Pangea host config by @sytuannguyen in #1602
• Adding Cam-Clay/Delft-Egg Plasticity Models by @shabnamjs in #1336
• Xcode build fix by @joshua-white in #1582
• Add TPL note to QuickStart by @joshua-white in #1605
• [Doc] Verification example with MCC plasticity model by @jhuang2601 in #1575
• [Doc] advanced example for simulating proppant slot test by @jhuang2601 in #1573
• [Doc] Fixed some inconsistencies and misprints in the updated tutorial by @mkhait in #1591
• Keep neighbors with one-way ghost exchange by @klevzoff in #1599
• Updating the input xml parsing, adding two xml unit tests by @cssherman in #1580
• Correct some XMLs by @sytuannguyen in #1608
• Disabled cross-flow when well is shut down by @francoishamon in #1601
• Doc for deviated PoroElastic wellbore by @sytuannguyen in #1585
• Fix broken links in tutorial examples by @jhuang2601 in #1614
• Add pygeosx tutorials and update advanced xml features by @cssherman in #1609
• Implemented contact relation update classes by @francoishamon in #1576
• Bugfixes for time history functionality. by @wrtobin in #1612
• update copyright and author on rtd configuration file by @rrsettgast in #1618
• Allow nested XML includes by @klevzoff in #1617
• Porosity initialization by @CusiniM in #1595
• Automatic allocation of compound constitutive relations by @CusiniM in #1584
• Adding a Pecan CPU target alongside the GPU one. by @TotoGaz in #1625
• Remove memory leak when creating already created HypreVector. by @TotoGaz in #1628
• restructure relationship between tests, examples, benchmarks by @rrsettgast in #1569
• Correct handling of relative paths with multiple input files by @klevzoff in #1634
• Improved/added table relative permeability/capillary pressure by @francoishamon in #1633
• Update "Included Files" section of User Guide by @klevzoff in #1621
• Add MPI barrier after creating composite input XML by @klevzoff in #1639
• [Doc] advanced example of Kirsch wellbore problem by @jhuang2601 in #1635
• [Doc] Verification example of a single fracture under shear compression by @jhuang2601 in #1615
• [Doc] KGD example with toughness dominated by @sytuannguyen in #1610
• Implemented aquifer boundary condition by @francoishamon in #1561
• Repairing a few XML files in the repo by @herve-gross in #1641
• Adding features for Wellbore meshing by @rrsettgast in #1424
• Added aquifer documentation by @francoishamon in #1648
• XML reorganization # 2 by @rrsettgast in #1643
• Linear combination of mass balance equations for compositional multiphase flow solvers by @castelletto1 in #1646
• Update Brew version for MPI by @francoishamon in #1658
• Refactored SourceFlux application in compositional solvers by @francoishamon in #1654
• Add PR and build numbers to deployment locations by @TotoGaz in #1665
• Repair/remove dead symlinks. by @TotoGaz in #1664
• [Docs] Example of KGD fracture with viscosity dominated regime by @sytuannguyen in #1642
• Update TPL for Pangea build by @sytuannguyen in #1649
• Structure of the wave propagator by @mndiaye24 in #1470
• Unify interfaces of FEM and VEM classes by @andrea-borio in #1489
• [docs] on win install v0 by @jafranc in #1622
• [Doc] advanced example of intersected fractures by @jhuang2601 in #1651
• Remove duplicated SolverBase::getDiscretization by @TotoGaz in #1667
• Fix ReadTheDocs builds by @bmhan12 in #1666
• Fixed division by zero in getHistoryMetadata by @francoishamon in #1674
• Feature/castelletto1/lai unit testing by @castelletto1 in #1669
• Implemented hydrostatic equilibrium initial condition by @francoishamon in #1607
• [Doc] extend sneddon problem to different solvers by @jhuang2601 in #1659
• Add solid internal energy. by @CusiniM in #1660
• Linear algebra changes by @klevzoff in #1668
• Added hydrostatic equilibrium documentation by @francoishamon in #1640
• Adding CO2 brine constitutives: brine density and viscosity based on Ezrokhi`s method by @mkhait in #1647
• Implemented new interface for accumulation and volume balance kernels by @francoishamon in #1672
• Contact relationships interface refactoring by @CusiniM in #1662
• Check that PR is assigned by @TotoGaz in #1691
• LAI vector refactor - zero copy assembly by @klevzoff in #1686
• Fix #1694 by @klevzoff in #1695
• Fix advanced problems with LagrangeContact by @jhuang2601 in #1692
• Added logging for boundary conditions in flow solvers by @francoishamon in #1676
• Add host-configs for Sherlock by @klevzoff in #1697
• Change github REST call addresses by @TotoGaz in #1703
• Reduce logs for packaging targets by @TotoGaz in #1705
• Correct Dockerfile indentation. by @TotoGaz in #1707
• Refactor enthalpy and internal energy for CO2 brine by @mkhait in #1689
• Extrinsic mesh data for flow solvers by @francoishamon in #1702
• Move to ubuntu 20.04 and gcc 9 & 10 by @TotoGaz in #1700
• Implemented extrinsic data for multiphase constitutive models by @francoishamon in #1709
• PVTDriver by @joshua-white in #1711
• Fixed Pamela parallel properties import (inside GEOSX) by @francoishamon in #1713
• Fixing petrowiki links by @castelletto1 in #1716
• Implemented new kernel interface for compositional properties by @francoishamon in #1698
• Implemented new kernel interface for flux by @francoishamon in #1696
• [Doc] Mandel's poroelastic problem by @jhuang2601 in #1684
• Remove accessor member variables from flow/well solvers by @francoishamon in #1718
• Reduce visibility of nested structures after refactoring. by @TotoGaz in #1720
• [Feature] implement fault permeability models by @jhuang2601 in #1564
• Added validation example for Problem 1.1 of Class (2009) by @francoishamon in #1721
• Implemented multivariable multidimensional interpolators for future OBL solver by @mkhait in #1714
• Improved the Newton solver for solubility and density in CO2-brine fluid by @francoishamon in #1729
• Implemented J-function capillary pressure by @francoishamon in #1734
• Implemented thermal conductivity models by @francoishamon in #1732
• Fix data access for permuted 2D arrays in functions by @klevzoff in #1740
• Docs/castelletto1/update publications by @castelletto1 in #1744
• Integrated tests on LassenSerial direct solver in all integrated tests by @castelletto1 in #1737
• Improvements towards arbitrary polyhedral grids by @TotoGaz in #1418
• Correct traits and add template getter protection. by @TotoGaz in #1747
• Updating geosx_xml_tools installation method by @cssherman in #1624
• Fixed pure water viscosity computation in CO2BrinePhillipsFluid by @francoishamon in #1739
• Simplification of the return_script in travis. by @TotoGaz in #1749
• Updated tutorial 3 with correct depths by @herve-gross in #1745
• Added warning and error messages in fluid and wells by @francoishamon in #1678
• Upgrade to vtk 9.0.3 by @TotoGaz in #1752
• buildrootdir/installrootdir options in config-build.py by @XL64 in #1741
• Bugfix/castelletto1/issue 1708 by @castelletto1 in #1754
• Enabling multiple mesh bodies by @rrsettgast in #1682
• Unified mass/molar conversions in fluid models by @francoishamon in #1760
• VTK Mesh Generator by @AntoineMazuyer in #1453
• Added flag to disable crossflow in wells by @francoishamon in #1757
• Fixing Tutorial 3 by @herve-gross in #1770
• Removes two double-quotes (XML invalid otherwise) by @herve-gross in #1769
• Correct namespaces which were not respecting camelCase convention by @TotoGaz in #1773
• Remove useless include by @TotoGaz in #1772
• Implemented Killough relative permeability hysteresis by @francoishamon in #1706
• Delay initialization of HistoryOuput by @labesse40 in #1765
• Fix face pressure BC with variable permeability by @klevzoff in #1785
• config file for pangea3 by @XL64 in #1748
• Set an error if non-supported object is requested for Pack. by @TotoGaz in #1782
• VEM support in FEM kernel interface by @andrea-borio in #1690
• [Doc] add validation example based on the experimental study of a KGD fracture by @jhuang2601 in #1780
• Combined multifluid derivatives to reduce fluid kernel wrapper size by @francoishamon in #1779
• Protect against implicit C++ relations by @TotoGaz in #1778
• PressureAtReceiversNp1 modification and SourceValue array for rhs calculation by @labesse40 in #1764
• Activated thermal option in CO2-brine fluid model by @francoishamon in #1755
• Fix a couple minor issues with XML preprocessor by @klevzoff in #1787
• Fix the reported issue (#1623) on running hydraulic fracturing example in tutorial by @jhuang2601 in #1728
• Restored compatibility checks in compositional solvers by @francoishamon in #1793
• Feature/besset pygeosx by @labesse40 in #1704
• Add tpls include in dummy cmake for doc. by @TotoGaz in #1777
• EFEM Linear solver strategies by @CusiniM in #1549
• fix clang10 issue by modifying dependency in unitTests CmakeLists by @labesse40 in #1807
• Revert "fix clang10 issue by modifying dependency in unitTests CmakeLists" by @rrsettgast in #1812
• Improve VisIt Compatibility by @cssherman in #1758
• Documentation: constitutive models in the developer guide by @CusiniM in #1570
• Fixed the computation of the initial total mass density by @francoishamon in #1797
• Update hypre, localIndex to int, add smoke and benchmark cases for ECP problem. by @CusiniM in #1767
• Correct argument order inconsistency. by @TotoGaz in #1820
• Group::m_wrappers[name] can be different from Group::m_wrappers[name]->getName() by @TotoGaz in #1803
• Refactored compositional flow unit tests by @francoishamon in #1809
• Poromechanics kernels refactoring by @castelletto1 in #1600
• Cleaned up isPointInsidePolyhedron by @francoishamon in #1822
• [Doc] Verification example of a radial frac in toughness dominated regime by @jhuang2601 in #1798
• Correct implementation for right-preconditioned BiCGStab by @castelletto1 in #1828
• *packByIndex* functions of Wrapper depends on sizedFromParent() == 1. by @TotoGaz in #1792
• VTK import improvements by @klevzoff in #1791
• Introduce ContactSolverBase by @CusiniM in #1677
• Improve packing naming conventions by @TotoGaz in #1831
• Fixed the double free corruption problem in the unit tests after integration of pygeosx by @sframba in #1813
• Fixed an input validation bug in well controls by @francoishamon in #1837
• Moving sphinx documentation scripts to their own files by @cssherman in #1796
• Moved fluid variables at time n to multifluid constitutive model by @francoishamon in #1827
• Update Publications.rst by @castelletto1 in #1849
• Correct Group::pack by @TotoGaz in #1850
• Improve config-build.py and put cache option at the end of the command line. by @TotoGaz in #1832
• Improved phase internal energy computation by @francoishamon in #1846
• Default pack/unpack for non packable/unpackable data. by @TotoGaz in #1788
• Change default behavior of pack member functions w.r.t. wrapper names by @TotoGaz in #1858
• Better warning message when wrapper is not here. by @TotoGaz in #1864
• Add another verification example of a radial frac developed in viscosity dominated regime by @jhuang2601 in #1821
• Increased readibility for hypre interface by @castelletto1 in #1857
• Fix performance regression of mesh map generation by @klevzoff in #1847
• Verification example of a PKN frac developed in viscosity dominated regime by @jhuang2601 in #1838
• Fixing ordering for pyramids by @castelletto1 in #1866
• Fix missing multibody loops in SolidMechanicsLagrangianFEM solver. by @CusiniM in #1862
• Add energy balance equation to Compositional solver. by @CusiniM in #1225
• Enable Coulomb Friction for EFEM Solvers by @CusiniM in #1840
• Update blt to v0.5.1 by @victorapm in #1879
• Update hdf5 silo conduit by @rrsettgast in #1874
• Improve VTK mesh distribution via ParMETIS by @klevzoff in #1869
• Implemented (field_n,field) flow formulation by @francoishamon in #1880
• Renaming prism to wedge by @castelletto1 in #1885
• Implemented well improvements by @francoishamon in #1886
• PVTPackage update by @francoishamon in #1893
• Computing cell volumes using numerical integration by @castelletto1 in #1887
• Fix VTK element output by @klevzoff in #1895
• Bugfix/castelletto1/pamela wedge import by @castelletto1 in #1896
• Adding check for duplicate named xml entries by @cssherman in #1868
• Add OBL-based solver, analog of Super Engine in DARTS by @mkhait in #1733
• add reinit method to waveSolverBase by @labesse40 in #1808
• Fix misplaced initialization for boundary tags by @acitrain in #1899
• Add a tutorial example for the triaxialDriver by @jhuang2601 in #1894
• Add region list to field synchronization by @CusiniM in #1878
• Using mermaid for class diagrams by @TotoGaz in #1897
• Fix function interface for PorousDelftEgg and PorousModifiedCamClay by @jhuang2601 in #1907
• New CPR-like MGR recipes for compositional flow by @francoishamon in #1712
• Update Publications.rst by @castelletto1 in #1916
• added check on ghostRank when checking if sources and receivers are local by @sframba in #1914
• Little time history reorganization by @TotoGaz in #1873
• Implemented single-phase accumulation kernel class by @francoishamon in #1881
• Update TPLs after hypre patch by @klevzoff in #1917
• Fixed parallel field import in VTKMeshGenerator by @francoishamon in #1918
• Added MGR recipe for thermal compositional solver by @francoishamon in #1836
• Adding pentagonal and hexagonal prism cells by @castelletto1 in #1902
• Fixed single-phase well MGR recipes by @francoishamon in #1921
• Correct wrong make -j command line by @TotoGaz in #1923
• Test plantuml for the doc by @TotoGaz in #1892
• Feature/castelletto1/suppress move logging by @castelletto1 in #1924
• Attempting to make the xml processing mpi aware by @cssherman in #1781
• Seismic traces: bugfix and unit test by @sframba in #1900
• Fixed misleading behavior in source flux boundary condition by @francoishamon in #1931
• update pangea3 host-config file and remove hard-coded Python version by @XL64 in #1938
• Remove mermaid support and use plantuml instead. by @TotoGaz in #1946
• Use Gitlab CI for nightly testing by @bmhan12 in #1888
• Fix some warning when compiled with some version of gcc by @acitrain in #1929
• missing mass intialization by @XL64 in #1954
• Adding an extra string parsing check for attributes by @cssherman in #1928
• Implemented a task for pre/post equilibration in coupled problems by @francoishamon in #1898
• fix OpenBLAS in Pangea3 host-config, add pygeosx to install process by @XL64 in #1951
• Fix VTK memory leak by @TotoGaz in #1950
• Refactored well solvers before coupling with poromechanics by @francoishamon in #1890
• Formatting schema string type names to avoid compiler-related diffs by @cssherman in #1961
• Implement a thermal single phase flow solver by @frankfeifan in #1920
• Simplify smoke test for ProppantSlotTest by @jhuang2601 in #1959
• Implemented VTK/Silo field selection from input file by @francoishamon in #1912
• Format python files with YAPF by @cssherman in #1947
• Azure Pipelines by @bmhan12 in #1969
• Move gcc 10 debug job back to Travis by @bmhan12 in #1988
• [Doc] Verification of induced stresses along a fault in a pressurized reservoir by @jhuang2601 in #1962
• Point to last build of TPL PR #187 by @XL64 in #1966
• LVArray PR that adds GPU sync when converting to numpy array by @XL64 in #1955
• Implemented solver statistics by @francoishamon in #1979
• Reorganize verification examples by @jhuang2601 in #1974
• Adding method to import nodesets in vtk meshes, convert abaqus meshes to vtu by @cssherman in #1942
• Implemented coupled solvers in the new style by @francoishamon in #1978
• Update/hypre chai raja by @rrsettgast in #1949
• Implemented face-based Dirichlet boundary condition in compositional solver by @francoishamon in #1986
• Restore Pangea2 deployment by @TotoGaz in #1999
• Bugfix/castelletto1/tutorial3 by @castelletto1 in #1990
• Add PT-Scotch as a partitioning method option in VTKMesh by @klevzoff in #1996
• Use brew's tap to install precise version of open-mpi by @TotoGaz in #2008
• Bugfix/mbader/wave propagation source injection mpi by @nmbader in #1995
• Implemented output of reservoir statistics by @francoishamon in #1735
• Add VTK Outputs wrappers for PyGEOSX by @paloma-martinez in #1956
• Feature/ascuotto/vtk import by @aure-lily in #1987
• Fix TPL discrepancy between travis and azure by @TotoGaz in #2013
• Replacing PAMELA mesh with VTK mesh by @castelletto1 in #1992
• Compute cell stencils between cell regions only. by @TotoGaz in #2012
• Move fracture fields from EdgeManager to FaceElementSubRegion. by @TotoGaz in #2011
• Re-enable unit tests in OSX CI and fix catalog registration by @klevzoff in #2019
• Improved parsing speed for table files by @klevzoff in #1983
• create a MeshObjectPath class to manage specification of paths to mesh objects by @rrsettgast in #1963
• Cleanup of face/cell boundary condition in flow solvers by @francoishamon in #2001
• Using large VMs travis by @TotoGaz in #2025
• Re-enable object libraries build by @bmhan12 in #2018
• Feature/mbader/second order acoustic pml by @nmbader in #1997
• Use VTK Global IDs if available by @sframba in #2017
• Add FaceBlock abstraction by @TotoGaz in #2034
• Remove hardcoded name "faceElementSubRegion" and "embeddedSurfaceSubRegion". by @TotoGaz in #2036
• Update TPL by @TotoGaz in #2038
• perform difference modulo 2PI on atan2 testings by @XL64 in #2030
• Multi-level discretization + High order Gauss-Lobatto for SEM by @labesse40 in #1324
• Verification of two-phase flow in porous media with Buckley-Leverett problem by @jhuang2601 in #2026
• Enabled wells with poromechanics by @francoishamon in #2005
• Added Newton global damping by default in compositional solvers by @francoishamon in #2039
• add multiBody/multiLevel support to VTK output system by @andrembcosta in #2027
• Implemented small changes in OBL by @francoishamon in #2044
• Rollback Azure Pipelines Jobs To Travis by @bmhan12 in #2037
• split fracture stencil and trigger fracture stencil for imported faults by @TotoGaz in #2048
• Added support for net-to-gross by @francoishamon in #2033
• Remove script and duplicated variables. by @TotoGaz in #2049
• Skipped the shallow mesh copies in the vtk output by @francoishamon in #2050
• travis stage for draft PR by @TotoGaz in #2053
• Fix quick start doc for submodules' fallback. by @TotoGaz in #2055
• Improve performance of ghost map unpacking by @klevzoff in #1989
• Force GEOSX organisation in submodules by @TotoGaz in #2058
• Removed MPI_CXX_BOOL by @corbett5 in #2060
• Fixed a crash in the statistics on GPU by @francoishamon in #2061
• Adding trapped mass as output from compositional statistics by @jafranc in #2052
• Implemented time stepping based on state change by @francoishamon in #2062
• Add prism 7+ support by @TotoGaz in #2051
• Add openmp and/or hdf5 to the dependencyList when needed with slurm MPI by @XL64 in #2067
• Add python tools documentation to sphinx by @cssherman in #1991
• Add support for NVTX in cuda traces using existing instrumentation by @XL64 in #1980
• Remove discretization attribute from SurfaceGenerator. by @CusiniM in #2077
• Increased well verbosity; made well shut down more robust by @francoishamon in #2078
• add support for apple M1 chip by @rrsettgast in #2074
• Renable parallelDevicePolicy in SEM by @XL64 in #2081
• Low order elastic wave equation by @acitrain in #1865
• Use real32 floats in WaveSolver by @XL64 in #2032
• fix compilation with nvtx support enabled by @XL64 in #2096
• Implemented source flux boundary condition in OBL by @francoishamon in #2088
• Reorganize fractures input files by @CusiniM in #2094
• Add ubuntu 22.04 LTS Jammy to travis by @TotoGaz in #2090

New Contributors

• @andrea-borio made their first contribution in #1220
• @sytuannguyen made their first contribution in #1271
• @mndiaye24 made their first contribution in #1269
• @jhuang2601 made their first contribution in #1474
• @tang39 made their first contribution in #1468
• @mkhait made their first contribution in #1591
• @XL64 made their first contribution in #1741
• @labesse40 made their first contribution in #1765
• @victorapm made their first contribution in #1879
• @acitrain made their first contribution in #1899
• @frankfeifan made their first contribution in #1920
• @nmbader made their first contribution in #1995
• @paloma-martinez made their first contribution in #1956
• @aure-lily made their first contribution in #1987

Full Changelog: v0.2.0...v0.2.1-alpha