feat: MpiWrapper::allReduce overload for arrays. #3446

CusiniM · 2024-11-15T20:46:13Z

We had a bug because two arrays of different size were exchanged by grabbing the buffers directly. This overload will prevent it from happening.

I had to add a small helper coz LvArray has ValueType instead of value_type like std objects.

src/coreComponents/common/TypesHelpers.hpp

…OS-DEV/GEOS into feature/cusini/addMpiWrapperForArrays

CusiniM · 2024-12-05T05:37:42Z

@rrsettgast , @corbett5 , @wrtobin this is ready for review.

src/coreComponents/common/TypesHelpers.hpp

MelReyCG

At this point, can we drop or at least set to private the following signature?

template< typename T >
  static int allReduce( T const * sendbuf, T * recvbuf, int count, MPI_Op op, MPI_Comm comm = MPI_COMM_GEOS );

All external calls seem to be able to be translated to Span<T[]>.

CusiniM · 2024-12-07T02:20:57Z

At this point, can we drop or at least set to private the following signature?
template< typename T >
  static int allReduce( T const * sendbuf, T * recvbuf, int count, MPI_Op op, MPI_Comm comm = MPI_COMM_GEOS );
All external calls seem to be able to be translated to Span<T[]>.

yes, you are right, let me try to do this.

…MpiWrapperForArrays

CusiniM · 2025-01-02T15:34:13Z

At this point, can we drop or at least set to private the following signature?
template< typename T >
  static int allReduce( T const * sendbuf, T * recvbuf, int count, MPI_Op op, MPI_Comm comm = MPI_COMM_GEOS );
All external calls seem to be able to be translated to Span<T[]>.

done.

CusiniM · 2025-01-03T10:02:50Z

@sframba or @acitrain can you please have a quick look at the changes to the wave solvers files and approve this?

CusiniM · 2025-01-10T23:37:17Z

...ysicsSolvers/wavePropagation/sem/elastic/secondOrderEqn/isotropic/ElasticWaveEquationSEM.cpp

+      MpiWrapper::allReduce( dasReceivers,
+                             dasReceivers,
+                             MpiWrapper::Reduction::Sum,


@sframba @acitrain this change triggers these diffs:

NFO: Total number of log files processed: 1537 WARNING: Found unfiltered diff in: /Users/cusini1/Downloads/integratedTests/TestResults/test_data/wavePropagation/elas3D_DAS_smoke_08/1497.python3_elas3D_DAS_smoke_08_2_restartcheck_.log INFO: Details of diffs: ******************************************************************************** Error: /Problem/Solvers/elasticSolver/dasSignalNp1AtReceivers Arrays of types float32 and float32 have 402 values of which 200 fail both the relative and absolute tests. Max absolute difference is at index (np.int64(200), np.int64(1)): value = 0.2, base_value = 0.0 Max relative difference is at index (np.int64(200), np.int64(1)): value = 0.2, base_value = 0.0 Statistics of the q values greater than 1.0 defined by absolute tolerance: N = 200 max = 2000.0001, mean = 500.0, std = 646.787 ******************************************************************************** Error: /Problem/Solvers/elasticSolver/dasSignalNp1AtReceivers Arrays of types float32 and float32 have 402 values of which 200 fail both the relative and absolute tests. Max absolute difference is at index (np.int64(200), np.int64(1)): value = 0.2, base_value = 0.0 Max relative difference is at index (np.int64(200), np.int64(1)): value = 0.2, base_value = 0.0 Statistics of the q values greater than 1.0 defined by absolute tolerance: N = 200 max = 2000.0001, mean = 500.0, std = 646.787 ******************************************************************************** Error: /Problem/Solvers/elasticSolver/dasSignalNp1AtReceivers Arrays of types float32 and float32 have 402 values of which 200 fail both the relative and absolute tests. Max absolute difference is at index (np.int64(200), np.int64(1)): value = 0.2, base_value = 0.0 Max relative difference is at index (np.int64(200), np.int64(1)): value = 0.2, base_value = 0.0 Statistics of the q values greater than 1.0 defined by absolute tolerance: N = 200 max = 2000.0001, mean = 500.0, std = 646.787 ******************************************************************************** Error: /Problem/Solvers/elasticSolver/dasSignalNp1AtReceivers Arrays of types float32 and float32 have 402 values of which 200 fail both the relative and absolute tests. Max absolute difference is at index (np.int64(200), np.int64(1)): value = 0.2, base_value = 0.0 Max relative difference is at index (np.int64(200), np.int64(1)): value = 0.2, base_value = 0.0 Statistics of the q values greater than 1.0 defined by absolute tolerance: N = 200 max = 2000.0001, mean = 500.0, std = 646.787 ******************************************************************************** Error: /Problem/Solvers/elasticSolver/dasSignalNp1AtReceivers Arrays of types float32 and float32 have 402 values of which 200 fail both the relative and absolute tests. Max absolute difference is at index (np.int64(200), np.int64(1)): value = 0.2, base_value = 0.0 Max relative difference is at index (np.int64(200), np.int64(1)): value = 0.2, base_value = 0.0 Statistics of the q values greater than 1.0 defined by absolute tolerance: N = 200 max = 2000.0001, mean = 500.0, std = 646.787 ******************************************************************************** Error: /Problem/Solvers/elasticSolver/dasSignalNp1AtReceivers Arrays of types float32 and float32 have 402 values of which 200 fail both the relative and absolute tests. Max absolute difference is at index (np.int64(200), np.int64(1)): value = 0.2, base_value = 0.0 Max relative difference is at index (np.int64(200), np.int64(1)): value = 0.2, base_value = 0.0 Statistics of the q values greater than 1.0 defined by absolute tolerance: N = 200 max = 2000.0001, mean = 500.0, std = 646.787 ******************************************************************************** Error: /Problem/Solvers/elasticSolver/dasSignalNp1AtReceivers Arrays of types float32 and float32 have 402 values of which 200 fail both the relative and absolute tests. Max absolute difference is at index (np.int64(200), np.int64(1)): value = 0.2, base_value = 0.0 Max relative difference is at index (np.int64(200), np.int64(1)): value = 0.2, base_value = 0.0 Statistics of the q values greater than 1.0 defined by absolute tolerance: N = 200 max = 2000.0001, mean = 500.0, std = 646.787

The only explanation I can find is that, in the previous code, m_linearDASGeometry.size( 0 ) was not the size of the array. The fact that arrayView2d< real32 > const dasReceivers = m_dasSignalNp1AtReceivers.toView(); makes me wonder why m_linearDASGeometry.size( 0 ) was passed as the size. I am not sure how these two objects are related...

Hi @CusiniM , I think that is exactly the reason: we have an extra receiver that simply tracks time:

GEOS/src/coreComponents/physicsSolvers/wavePropagation/sem/elastic/secondOrderEqn/isotropic/ElasticWaveEquationSEM.cpp

Line 221 in fd36d2a

m_dasSignalNp1AtReceivers.resize( m_nsamplesSeismoTrace, numReceiversGlobal + 1 );

This receiver does not need to be summed across ranks. Therefore only the first dasReceivers .size() - 1 (that is, m_linearDASGeometry.size( 0 )) arrays need to be summed, not the last one. Does this break your new structure or can it be accomodated?

Yeah, it does break it in the sense that the overload I put in place for arrays was written with the idea of summing the full array across ranks. Basically I wanted to ensure that one does not provide the wrong size (which caused a couple of bugs in the past). We could add an overload to allow for a the reduce operation to occur on a specified size <= array.size().

@sframba Is there a reason that this all has to be in one array? It seems that the array is holding different quantity types? If so, can we just create a separate object to hold the last value that is of different quantity type?

@rrsettgast as discussed together, no there is no reason why this should be all one array. We could (should) separate the extra array so that they become of homogeneous dimension. However, this requires some changes in our python code as well. Could we maybe :

Implement the overload suggested by @CusiniM for now, so we unlock this PR, then

When the "strong unit typing" work starts officially, add an item about wave solvers' receiver uniformity and assign it to us, so we can take the time to tidy up this problem properly?
What do you guys think?

…OS-DEV/GEOS into feature/cusini/addMpiWrapperForArrays

codecov · 2025-01-14T19:33:23Z

Codecov Report

Attention: Patch coverage is 58.97436% with 16 lines in your changes missing coverage. Please review.

Project coverage is 56.89%. Comparing base (18e0c4e) to head (c18b631).

Files with missing lines	Patch %	Lines
...olvers/solidMechanics/SolidMechanicsStatistics.cpp	0.00%	4 Missing ⚠️
src/coreComponents/common/MpiWrapper.hpp	84.61%	2 Missing ⚠️
...onents/physicsSolvers/PhysicsSolverBaseKernels.hpp	33.33%	2 Missing ⚠️
...hysicsSolvers/solidMechanics/SolidMechanicsMPM.cpp	0.00%	2 Missing ⚠️
src/coreComponents/mesh/ParticleManager.cpp	0.00%	1 Missing ⚠️
...nents/physicsSolvers/contact/ContactSolverBase.cpp	0.00%	1 Missing ⚠️
...olvers/contact/SolidMechanicsEmbeddedFractures.cpp	0.00%	1 Missing ⚠️
...hysicsSolvers/multiphysics/HydrofractureSolver.cpp	0.00%	1 Missing ⚠️
...ers/solidMechanics/SolidMechanicsLagrangianFEM.cpp	0.00%	1 Missing ⚠️
...sicsSolvers/surfaceGeneration/SurfaceGenerator.cpp	0.00%	1 Missing ⚠️

Additional details and impacted files

@@             Coverage Diff             @@
##           develop    #3446      +/-   ##
===========================================
- Coverage    56.89%   56.89%   -0.01%     
===========================================
  Files         1157     1157              
  Lines       101214   101227      +13     
===========================================
+ Hits         57582    57589       +7     
- Misses       43632    43638       +6

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CusiniM · 2025-01-15T16:58:23Z

@sframba please have a look now and approve.

feat: MpiWrapper::allReduce overload for arrays.

20e94e1

CusiniM requested review from rrsettgast, MelReyCG, corbett5 and wrtobin as code owners November 15, 2024 20:46

CusiniM commented Nov 15, 2024

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CusiniM commented Nov 15, 2024

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small fixes.

a1f1049

CusiniM self-assigned this Nov 15, 2024

CusiniM added the flag: no rebaseline Does not require rebaseline label Nov 15, 2024

CusiniM added 2 commits November 15, 2024 14:46

use new function.

7ef92f5

Merge branch 'feature/cusini/addMpiWrapperForArrays' of github.com:GE…

87f068d

…OS-DEV/GEOS into feature/cusini/addMpiWrapperForArrays

CusiniM mentioned this pull request Nov 20, 2024

fix: bugfix about norm vector size #3445

Merged

Merge branch 'develop' into feature/cusini/addMpiWrapperForArrays

50a7f26

rrsettgast approved these changes Dec 5, 2024

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MelReyCG reviewed Dec 5, 2024

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CusiniM added 2 commits January 2, 2025 14:14

Merge remote-tracking branch 'origin/develop' into feature/cusini/add…

eeb9952

…MpiWrapperForArrays

WIP: make function private.

81650fc

CusiniM requested review from sframba, acitrain, jhuang2601, castelletto1, paveltomin, frankfeifan, ryar9534, matteofrigo5, Guotong-Ren and untereiner as code owners January 2, 2025 15:24

CusiniM added 2 commits January 2, 2025 16:31

remove spans of 1.

7ed66c4

uncrustify

650a197

paveltomin approved these changes Jan 2, 2025

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matteofrigo5 approved these changes Jan 2, 2025

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CusiniM added ci: run CUDA builds Allows to triggers (costly) CUDA jobs ci: run integrated tests Allows to run the integrated tests in GEOS CI labels Jan 3, 2025

CusiniM commented Jan 10, 2025

View reviewed changes

CusiniM and others added 6 commits January 13, 2025 08:11

add another overload.

3ffe1fe

Merge branch 'develop' into feature/cusini/addMpiWrapperForArrays

1505f38

forgot ;

28e36f5

Merge branch 'feature/cusini/addMpiWrapperForArrays' of github.com:GE…

22a1840

…OS-DEV/GEOS into feature/cusini/addMpiWrapperForArrays

use new size.

ad490d4

add static.

018e184

CusiniM added the ci: run code coverage enables running of the code coverage CI jobs label Jan 13, 2025

Merge branch 'develop' into feature/cusini/addMpiWrapperForArrays

eba5803

Merge branch 'develop' into feature/cusini/addMpiWrapperForArrays

c18b631

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feat: MpiWrapper::allReduce overload for arrays. #3446

feat: MpiWrapper::allReduce overload for arrays. #3446

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feat: MpiWrapper::allReduce overload for arrays. #3446

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feat: MpiWrapper::allReduce overload for arrays. #3446

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