Version 2.1.0

Changelog

• Added Tmerge by default instead of StringTie to coalesce assembled transcripts into a novel annotation.
• Added --coalesce-transcripts-with to select the tool used to coalesce transcripts.
• Added --min-monoexonic-occurrence and --min-monoexonic-tpm to filter rare monoexonic transcripts separately after assembly.
• Added hierarchical clustering on genes TPM to compare quantification groups.
• Updated dependencies:
  • MultiQC 1.9 -> 1.12
  • STAR 2.7.9a -> 2.7.10a
  • Subread 1.6.0 -> 2.0.1