Merge pull request #80 from EnvironmentOntology/February-release

February release

.gitignore

@@ -21,3 +21,4 @@ src/ontology/patterns
 *.tmp.obo
 *.tmp.owl
 src/patterns/pattern_owl_seed.txt
+src/ontology/Dockerfile

.travis.yml

@@ -1,49 +1,30 @@
-sudo: true
-language: python
-python:
-  - "3.4"
+## REMEMBER TO SET UP YOUR GITHUB REPO FOR TRAVIS
+## Go to: https://travis-ci.org/obophenotype for details
+sudo: required
 
-## http://superuser.com/questions/993718/can-i-install-java-8-on-travis-ci-for-a-python-project
-addons:
-  apt:
-    packages:
-      - oracle-java8-installer
+services:
+  - docker
 
-# other answer:      
 before_install:
-  - sudo apt-get update
-  - sudo apt-get install oracle-java8-installer
-  - sudo update-java-alternatives -s java-8-oracle
-  - sudo apt-get install libjson-perl
-
-install:
-  - "pip install pyyaml"
-
-before_script:
-  - mkdir -p bin
-  - export PATH=$PATH:$PWD/bin
-  - wget http://build.berkeleybop.org/userContent/owltools/owltools -O bin/owltools
-  - wget http://build.berkeleybop.org/userContent/owltools/ontology-release-runner -O bin/ontology-release-runner
-  - wget http://build.berkeleybop.org/userContent/owltools/owltools-runner-all.jar -O bin/owltools-runner-all.jar
-  - wget http://build.berkeleybop.org/userContent/owltools/owltools-oort-all.jar -O bin/owltools-oort-all.jar
-  - wget --no-check-certificate https://raw.githubusercontent.com/cmungall/pattern2owl/master/apply-pattern.py -O bin/apply-pattern.py
-  - wget --no-check-certificate https://raw.githubusercontent.com/cmungall/pattern2owl/master/extract-obo-syns.pl -O bin/extract-obo-syns.pl
-  - wget http://build.berkeleybop.org/job/robot/lastSuccessfulBuild/artifact/bin/robot -O bin/robot
-  - wget http://build.berkeleybop.org/job/robot/lastSuccessfulBuild/artifact/bin/robot.jar -O bin/robot.jar
-  - chmod +x bin/*
+  - docker pull obolibrary/odkfull
 
 # command to run tests
-script: cd src/ontology && make test
+script: cd src/ontology && sh run.sh make test
 
 #after_success:
 #  coveralls
 
 # whitelist
-#branches:
-#  only:
-#    - master
+branches:
+  only:
+    - master
+    - test-travis
 
+### Add your own lists here
+### See https://github.com/INCATools/ontology-starter-kit/issues/35
 notifications:
   email:
     - [email protected]
+    - [email protected]
+    - [email protected]