Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Add location for hg19 SpliceVault assembly file #765

Open
wants to merge 1 commit into
base: postreleasefix/114
Choose a base branch
from
Open

Add location for hg19 SpliceVault assembly file #765

Changes from all commits
Commits
Show all changes
1 commit
Select commit
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
6 changes: 5 additions & 1 deletion SpliceVault.pm
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -71,10 +71,14 @@ limitations under the License.
resource: https://pubmed.ncbi.nlm.nih.gov/36747048

The tabix utility must be installed in your path to use this plugin. The
SpliceVault TSV and respective index (TBI) for GRCh38 can be downloaded from:
SpliceVault TSV and respective index (TBI) for GRCh38 can be downloaded from here:
- https://ftp.ensembl.org/pub/current_variation/SpliceVault/SpliceVault_data_GRCh38.tsv.gz
- https://ftp.ensembl.org/pub/current_variation/SpliceVault/SpliceVault_data_GRCh38.tsv.gz.tbi

and, for GRCh37 assembly can be downloaded from here:
- https://ftp.ensembl.org/pub/current_variation/SpliceVault/SpliceVault_data_hg19.tsv.gz
- https://ftp.ensembl.org/pub/current_variation/SpliceVault/SpliceVault_data_hg19.tsv.gz.tbi

To filter results, please use filter_vep with the output file or standard
output. Documentation on filter_vep is available at:
https://www.ensembl.org/info/docs/tools/vep/script/vep_filter.html
Expand Down