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{2023.06}[2023a,sapphire_rapids] Remaining apps from EB 4.9.1 2023a easystack #895

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merged 1 commit into from
Jan 26, 2025
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{2023.06}[2023a,sapphire_rapids] Remaining apps from EB 4.9.1 2023a easystack #895

merged 1 commit into from
Jan 26, 2025

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@bedroge bedroge commented Jan 25, 2025

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@bedroge bedroge added 2023.06-software.eessi.io 2023.06 version of software.eessi.io sapphire_rapids labels Jan 25, 2025
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eessi-bot bot commented Jan 25, 2025

Instance eessi-bot-mc-aws is configured to build for:

  • architectures: x86_64/generic, x86_64/intel/haswell, x86_64/intel/sapphire_rapids, x86_64/intel/skylake_avx512, x86_64/amd/zen2, x86_64/amd/zen3, aarch64/generic, aarch64/neoverse_n1, aarch64/neoverse_v1
  • repositories: eessi.io-2023.06-software, eessi.io-2023.06-compat

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eessi-bot bot commented Jan 25, 2025

Instance eessi-bot-mc-azure is configured to build for:

  • architectures: x86_64/amd/zen4
  • repositories: eessi.io-2023.06-software, eessi.io-2023.06-compat

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bedroge commented Jan 25, 2025

bot: build repo:eessi.io-2023.06-software arch:x86_64/intel/sapphire_rapids

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eessi-bot bot commented Jan 25, 2025 •
edited
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Updates by the bot instance eessi-bot-mc-aws (click for details)

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eessi-bot bot commented Jan 25, 2025 •
edited
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Updates by the bot instance eessi-bot-mc-azure (click for details)

  • received bot command build repo:eessi.io-2023.06-software arch:x86_64/intel/sapphire_rapids from bedroge

    • expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/intel/sapphire_rapids

  • handling command build repository:eessi.io-2023.06-software architecture:x86_64/intel/sapphire_rapids resulted in:

    • no jobs were submitted

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eessi-bot bot commented Jan 25, 2025 •
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New job on instance eessi-bot-mc-aws for CPU micro-architecture x86_64-intel-sapphire_rapids for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2025.01/pr_895/42607

date job status comment
Jan 25 22:50:12 UTC 2025 submitted job id 42607 awaits release by job manager
Jan 25 22:50:26 UTC 2025 released job awaits launch by Slurm scheduler
Jan 25 22:55:28 UTC 2025 running job 42607 is running
Jan 26 13:28:26 UTC 2025 finished
😁 SUCCESS (click triangle for details)
Details
✅ job output file slurm-42607.out
✅ no message matching FATAL:
✅ no message matching ERROR:
✅ no message matching FAILED:
✅ no message matching required modules missing:
✅ found message(s) matching No missing installations
✅ found message matching .tar.gz created!
Artefacts
eessi-2023.06-software-linux-x86_64-intel-sapphire_rapids-1737895229.tar.gzsize: 8827 MiB (9256482271 bytes)
entries: 50804
modules under 2023.06/software/linux/x86_64/intel/sapphire_rapids/modules/all
Arrow/14.0.1-gfbf-2023a.lua
arrow-R/14.0.1-foss-2023a-R-4.3.2.lua
Biopython/1.83-foss-2023a.lua
BLAST+/2.14.1-gompi-2023a.lua
cimfomfa/22.273-GCCcore-12.3.0.lua
cpio/2.15-GCCcore-12.3.0.lua
DIAMOND/2.1.8-GCC-12.3.0.lua
ESPResSo/4.2.2-foss-2023a.lua
FastME/2.1.6.3-GCC-12.3.0.lua
GATK/4.5.0.0-GCCcore-12.3.0-Java-17.lua
ipympl/0.9.3-gfbf-2023a.lua
ISA-L/2.30.0-GCCcore-12.3.0.lua
Java/17.0.6.lua
Java/.modulerc.lua
LMDB/0.9.31-GCCcore-12.3.0.lua
MCL/22.282-GCCcore-12.3.0.lua
MMseqs2/14-7e284-gompi-2023a.lua
ncdu/1.18-GCC-12.3.0.lua
OrthoFinder/2.5.5-foss-2023a.lua
pyfaidx/0.8.1.1-GCCcore-12.3.0.lua
Pysam/0.22.0-GCC-12.3.0.lua
python-isal/1.1.0-GCCcore-12.3.0.lua
RapidJSON/1.1.0-20230928-GCCcore-12.3.0.lua
R-bundle-Bioconductor/3.18-foss-2023a-R-4.3.2.lua
SAMtools/1.18-GCC-12.3.0.lua
utf8proc/2.8.0-GCCcore-12.3.0.lua
Valgrind/3.21.0-gompi-2023a.lua
WhatsHap/2.2-foss-2023a.lua
software under 2023.06/software/linux/x86_64/intel/sapphire_rapids/software
Arrow/14.0.1-gfbf-2023a
arrow-R/14.0.1-foss-2023a-R-4.3.2
Biopython/1.83-foss-2023a
BLAST+/2.14.1-gompi-2023a
cimfomfa/22.273-GCCcore-12.3.0
cpio/2.15-GCCcore-12.3.0
DIAMOND/2.1.8-GCC-12.3.0
ESPResSo/4.2.2-foss-2023a
FastME/2.1.6.3-GCC-12.3.0
GATK/4.5.0.0-GCCcore-12.3.0-Java-17
ipympl/0.9.3-gfbf-2023a
ISA-L/2.30.0-GCCcore-12.3.0
Java/17.0.6
LMDB/0.9.31-GCCcore-12.3.0
MCL/22.282-GCCcore-12.3.0
MMseqs2/14-7e284-gompi-2023a
ncdu/1.18-GCC-12.3.0
OrthoFinder/2.5.5-foss-2023a
pyfaidx/0.8.1.1-GCCcore-12.3.0
Pysam/0.22.0-GCC-12.3.0
python-isal/1.1.0-GCCcore-12.3.0
RapidJSON/1.1.0-20230928-GCCcore-12.3.0
R-bundle-Bioconductor/3.18-foss-2023a-R-4.3.2
SAMtools/1.18-GCC-12.3.0
utf8proc/2.8.0-GCCcore-12.3.0
Valgrind/3.21.0-gompi-2023a
WhatsHap/2.2-foss-2023a
other under 2023.06/software/linux/x86_64/intel/sapphire_rapids
no other files in tarball
Jan 26 13:28:26 UTC 2025 test result
😁 SUCCESS (click triangle for details)
ReFrame Summary
[ OK ] ( 1/15) EESSI_ESPRESSO_LJ_PARTICLES %module_name=ESPResSo/4.2.2-foss-2023b %device_type=cpu %scale=1_node /adc964f6 @BotBuildTests:x86-64-intel-srapids-node+default
P: perf: 0.001297 s/step (r:0, l:None, u:None)
[ OK ] ( 2/15) EESSI_ESPRESSO_LJ_PARTICLES %module_name=ESPResSo/4.2.2-foss-2023a %device_type=cpu %scale=1_node /3b8b8926 @BotBuildTests:x86-64-intel-srapids-node+default
P: perf: 0.001279 s/step (r:0, l:None, u:None)
[ OK ] ( 3/15) EESSI_ESPRESSO_LJ_PARTICLES %module_name=ESPResSo/4.2.1-foss-2023a %device_type=cpu %scale=1_node /fdd6aced @BotBuildTests:x86-64-intel-srapids-node+default
P: perf: 0.001286 s/step (r:0, l:None, u:None)
[ OK ] ( 4/15) EESSI_ESPRESSO_P3M_IONIC_CRYSTALS %module_name=ESPResSo/4.2.2-foss-2023b %device_type=cpu %scale=1_node /3b90ffd6 @BotBuildTests:x86-64-intel-srapids-node+default
P: perf: 0.2595 s/step (r:0, l:None, u:None)
[ OK ] ( 5/15) EESSI_ESPRESSO_P3M_IONIC_CRYSTALS %module_name=ESPResSo/4.2.2-foss-2023a %device_type=cpu %scale=1_node /f1621689 @BotBuildTests:x86-64-intel-srapids-node+default
P: perf: 0.2562 s/step (r:0, l:None, u:None)
[ OK ] ( 6/15) EESSI_ESPRESSO_P3M_IONIC_CRYSTALS %module_name=ESPResSo/4.2.1-foss-2023a %device_type=cpu %scale=1_node /4a9e965c @BotBuildTests:x86-64-intel-srapids-node+default
P: perf: 0.2518 s/step (r:0, l:None, u:None)
[ OK ] ( 7/15) EESSI_LAMMPS_lj %device_type=cpu %module_name=LAMMPS/2Aug2023_update2-foss-2023a-kokkos %scale=1_node /04ff9ece @BotBuildTests:x86-64-intel-srapids-node+default
P: perf: 662.055 timesteps/s (r:0, l:None, u:None)
[ OK ] ( 8/15) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_allreduce %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %scale=1_node %device_type=cpu /775175bf @BotBuildTests:x86-64-intel-srapids-node+default
P: latency: 1.88 us (r:0, l:None, u:None)
[ OK ] ( 9/15) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_allreduce %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %scale=1_node %device_type=cpu /52707c40 @BotBuildTests:x86-64-intel-srapids-node+default
P: latency: 1.65 us (r:0, l:None, u:None)
[ OK ] (10/15) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_alltoall %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %scale=1_node %device_type=cpu /b1aacda9 @BotBuildTests:x86-64-intel-srapids-node+default
P: latency: 3.7 us (r:0, l:None, u:None)
[ OK ] (11/15) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_alltoall %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %scale=1_node %device_type=cpu /c6bad193 @BotBuildTests:x86-64-intel-srapids-node+default
P: latency: 3.88 us (r:0, l:None, u:None)
[ OK ] (12/15) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_latency %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %scale=1_node /15cad6c4 @BotBuildTests:x86-64-intel-srapids-node+default
P: latency: 0.4 us (r:0, l:None, u:None)
[ OK ] (13/15) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_latency %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %scale=1_node /6672deda @BotBuildTests:x86-64-intel-srapids-node+default
P: latency: 0.37 us (r:0, l:None, u:None)
[ OK ] (14/15) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_bw %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %scale=1_node /2a9a47b1 @BotBuildTests:x86-64-intel-srapids-node+default
P: bandwidth: 13070.33 MB/s (r:0, l:None, u:None)
[ OK ] (15/15) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_bw %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %scale=1_node /1b24ab8e @BotBuildTests:x86-64-intel-srapids-node+default
P: bandwidth: 13513.97 MB/s (r:0, l:None, u:None)
[ PASSED ] Ran 15/15 test case(s) from 15 check(s) (0 failure(s), 0 skipped, 0 aborted)
Details
✅ job output file slurm-42607.out
✅ no message matching ERROR:
✅ no message matching [\s*FAILED\s*].*Ran .* test case
Jan 26 15:51:14 UTC 2025 uploaded transfer of eessi-2023.06-software-linux-x86_64-intel-sapphire_rapids-1737895229.tar.gz to S3 bucket succeeded

@bedroge bedroge changed the title {2023.06} Remaining apps from EB 4.9.1 2023a easystack {2023.06}[2023a,sapphire_rapids] Remaining apps from EB 4.9.1 2023a easystack Jan 25, 2025
@bedroge bedroge added the ready-to-deploy Mark a PR as ready to deploy label Jan 26, 2025
@bedroge bedroge mentioned this pull request Jan 26, 2025
Merged
@boegel boegel added bot:deploy Ask bot to deploy missing software installations to EESSI and removed ready-to-deploy Mark a PR as ready to deploy labels Jan 26, 2025
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boegel commented Jan 26, 2025

tarball deploy triggered, so merging this...

@boegel boegel merged commit ebe21c1 into EESSI:2023.06-software.eessi.io Jan 26, 2025
49 checks passed
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eessi-bot bot commented Jan 26, 2025

PR merged! Moved ['/project/def-users/SHARED/jobs/2025.01/pr_895/42607'] to /project/def-users/SHARED/trash_bin/EESSI/software-layer/2025.01.26

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eessi-bot bot commented Jan 26, 2025

PR merged! Moved [] to /project/def-users/SHARED/trash_bin/EESSI/software-layer/2025.01.26

@bedroge bedroge deleted the sapphire_rapids_eb491_2023a branch January 26, 2025 16:43
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