add flag to gff generator

EBI-Metagenomics · Jan 28, 2025 · 1a7298b · 1a7298b
1 parent 2231a56
commit 1a7298b
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/modules/local/write_gff/main.nf b/modules/local/write_gff/main.nf
@@ -11,7 +11,7 @@ process WRITE_GFF {
     path("${meta.id}_virify.gff")
 
     script:
-    def use_proteins_flag = $params.use_proteins ? "--use-proteins": "" ;
+    def use_proteins_flag = ${params.use_proteins} ? "--use-proteins": "" ;
     """
     write_viral_gff.py \
     $use_proteins_flag \