Add Viewer support

zppy/defaults/default.ini

@@ -305,7 +305,13 @@ figstr = string(default="")
 # The specific subdirectory with the ocean data
 # NOTE: always overrides value in [default]
 input_subdir = string(default="archive/ocn/hist")
+# Set to True to construct a Viewer page
+make_viewer = string(default="False")
 moc_file = string(default="")
+# Number of columns per page
+ncols = integer(default=2)
+# Number of rows per page
+nrows = integer(default=4)
 # The names of the plots you want displayed
 # Variable requirements:
 # net_toa_flux_restom requires RESTOM
@@ -319,6 +325,7 @@ plots_original = string(default="net_toa_flux_restom,global_surface_air_temperat
 # These should be a subset of the `vars` generated by the `ts` `glb` subtasks.
 plots_atm = string(default="")
 plots_ice = string(default="")
+# Set `plots_lnd = "all"` to run every variable in the land csv file.
 plots_lnd = string(default="")
 plots_ocn = string(default="")
 # regions to plot: glb, n, s (global, northern hemisphere, southern hemisphere)

zppy/templates/global_time_series.bash

@@ -7,13 +7,14 @@
 ################################################################################
 results_dir={{ prefix }}_results
 
-zi-global-time-series --use_ocn {{ use_ocn }} --input {{ input }} --input_subdir {{ input_subdir }} --moc_file {{ moc_file }} --case_dir {{ output }} --experiment_name {{ experiment_name }} --figstr {{ figstr }} --color {{ color }} --ts_num_years {{ ts_num_years }} --plots_original {{ plots_original }} --plots_atm {{ plots_atm }} --plots_ice {{ plots_ice }} --plots_lnd {{ plots_lnd }} --plots_ocn {{ plots_ocn }} --nrows 4 --ncols 2 --results_dir ${results_dir} --regions {{ regions }} --start_yr {{ year1 }} --end_yr {{ year2 }}
+zi-global-time-series --use_ocn {{ use_ocn }} --input {{ input }} --input_subdir {{ input_subdir }} --moc_file {{ moc_file }} --case_dir {{ output }} --experiment_name {{ experiment_name }} --figstr {{ figstr }} --color {{ color }} --ts_num_years {{ ts_num_years }} --plots_original {{ plots_original }} --plots_atm {{ plots_atm }} --plots_ice {{ plots_ice }} --plots_lnd {{ plots_lnd }} --plots_ocn {{ plots_ocn }} --nrows {{ nrows }} --ncols {{ ncols }} --results_dir ${results_dir} --regions {{ regions }} --make_viewer {{ make_viewer }} --start_yr {{ year1 }} --end_yr {{ year2 }}
 
 echo 'Copy images to directory'
 results_dir_absolute_path={{ scriptDir }}/${results_dir}
 mkdir -p ${results_dir_absolute_path}
 cp ${results_dir}/*.pdf ${results_dir_absolute_path}
 cp ${results_dir}/*.png ${results_dir_absolute_path}
+cp -r ${results_dir}/viewer ${results_dir_absolute_path}
 
 ################################################################################
 case={{ case }}

zppy/templates/ts.bash

@@ -62,7 +62,7 @@ if grep -q "*" input.txt; then
 fi
 # Generate time series files
 # If the user-defined parameter "vars" is "", then ${vars}, defined above, will be too.
-cat input.txt | ncclimo \
+cat input.txt | /home/ac.zender/bin_chrysalis/ncclimo --npo \
 -c {{ case }} \
 {%- if vars != '' %}
 -v ${vars} \