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fixes #133, fixes #134, fixes #135
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elviram committed Apr 1, 2016
1 parent c489c86 commit db6dc78
Showing 81 changed files with 1,265,571 additions and 57,729 deletions.
389 changes: 202 additions & 187 deletions src/ontology/catalog-v001.xml

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34 changes: 7 additions & 27 deletions src/ontology/diffs/doid-lastbuild.obo
Original file line number Diff line number Diff line change
@@ -1,6 +1,6 @@
format-version: 1.2
data-version: releases/2016-03-18
date: 18:03:2016 16:27
data-version: releases/2016-03-25
date: 25:03:2016 16:27
saved-by: elvira
auto-generated-by: OBO-Edit 2.3.1
subsetdef: DO_cancer_slim "DO cancer slim"
@@ -2757,7 +2757,6 @@ xref: ICD9CM:333.94
xref: MSH:D012148
xref: NCI:C84501
xref: OMIM:102300
xref: OMIM:608830
xref: OMIM:610438
xref: OMIM:610439
xref: OMIM:611185
@@ -4547,7 +4546,6 @@ xref: OMIM:613074
xref: OMIM:613558
xref: OMIM:614152
xref: OMIM:614211
xref: OMIM:614314
xref: OMIM:614614
xref: OMIM:615629
xref: OMIM:615649
@@ -5451,7 +5449,6 @@ xref: OMIM:203290
xref: OMIM:606574
xref: OMIM:606952
xref: OMIM:614473
xref: OMIM:615079
xref: OMIM:615312
xref: ORDO:55
is_a: DOID:0050737 ! autosomal recessive disease
@@ -6893,7 +6890,7 @@ subset: DO_MGI_slim
synonym: "chemodectoma" EXACT []
xref: MSH:D010235
xref: NCI:C3308
xref: OMIM:116310
xref: OMIM:115310
xref: OMIM:168000
xref: OMIM:601650
xref: OMIM:605373
@@ -7079,7 +7076,6 @@ synonym: "N-alpha-acetyltransferase" EXACT []
synonym: "N-terminal acetyltransferase deficiency" EXACT []
synonym: "OGDNS" EXACT []
synonym: "X-linked Malformation and Infantile Lethality Syndrome" EXACT []
xref: OMIM:300013
xref: OMIM:300855
is_a: DOID:0050735 ! X-linked disease
created_by: lschriml
@@ -8199,7 +8195,6 @@ id: DOID:0050884
name: triosephosphate isomerase deficiency
def: "A glucose metabolism disorder that is characterized by chronic haemolytic anaemia, cardiomyopathy, susceptibility to infections and severe neurological dysfunction, and has_physical_basis_in the triosephosphate isomerase enzyme (TPI1) gene inherited as an autosomal recessive trait." [url:http\://en.wikipedia.org/wiki/Triosephosphate_isomerase_deficiency, url:http\://omim.org/entry/615512, url:http\://www.ncbi.nlm.nih.gov/pubmed/16980388, url:http\://www.ncbi.nlm.nih.gov/pubmed/17424909, url:http\://www.ncbi.nlm.nih.gov/pubmed/23318931, url:http\://www.orpha.net/consor/cgi-bin/OC_Exp.php?Lng=GB&Expert=868, url:http\://www.rarediseases.org/rare-disease-information/rare-diseases/byID/1183/printFullReport]
synonym: "Triose phosphate-isomerase deficiency" EXACT []
xref: OMIM:190450
xref: OMIM:615512
is_a: DOID:4194 ! glucose metabolism disease
created_by: lschriml
@@ -9713,7 +9708,6 @@ id: DOID:0060064
name: sideroblastic anemia with spinocerebellar ataxia
comment: OMIM mapping confirmed by DO. [LS].
synonym: "ASAT" EXACT []
xref: OMIM:310310
is_a: DOID:8955 ! sideroblastic anemia

[Term]
@@ -11728,9 +11722,9 @@ comment: NT MGI.
subset: DO_MGI_slim
xref: OMIM:606711
xref: OMIM:606712
xref: OMIM:607134
xref: OMIM:612514
xref: OMIM:615432
xref: OMIM:617134
is_a: DOID:93 ! language disorder
created_by: emitraka
creation_date: 2015-01-28T16:29:51Z
@@ -12583,7 +12577,7 @@ subset: DO_rare_slim
synonym: "Crisponi syndrome" EXACT []
synonym: "Sohar-Crisponi syndrome" EXACT []
xref: MSH:C536214
xref: OMIM:242730
xref: OMIM:272430
xref: OMIM:610313
xref: ORDO:157820
xref: SNOMEDCT_US_2015_03_01:702363009
@@ -12811,7 +12805,6 @@ xref: OMIM:615761
xref: OMIM:615828
xref: OMIM:615834
xref: OMIM:615873
xref: OMIM:615886
xref: ORDO:178469
is_a: DOID:0050889 ! non-syndromic intellectual disability
created_by: emitraka
@@ -18578,7 +18571,6 @@ xref: OMIM:611928
xref: OMIM:611955
xref: OMIM:611958
xref: OMIM:611959
xref: OMIM:614761
xref: ORDO:1331
xref: SNOMEDCT_US_2015_03_01:126906006
xref: SNOMEDCT_US_2015_03_01:363448003
@@ -19943,7 +19935,6 @@ xref: ICD10CM:Q43.1
xref: MSH:D006627
xref: NCI:C34700
xref: OMIM:142623
xref: OMIM:202550
xref: OMIM:600155
xref: OMIM:613711
xref: OMIM:613712
@@ -20739,7 +20730,6 @@ xref: OMIM:601414
xref: OMIM:601718
xref: OMIM:602594
xref: OMIM:602772
xref: OMIM:603809
xref: OMIM:606068
xref: OMIM:607921
xref: OMIM:608133
@@ -21433,7 +21423,7 @@ xref: MSH:D003554
xref: NCI:C2976
xref: OMIM:219750
xref: OMIM:219800
xref: OMIM:219990
xref: OMIM:219900
xref: ORDO:213
xref: SNOMEDCT_US_2015_03_01:111398009
xref: SNOMEDCT_US_2015_03_01:190681003
@@ -23854,7 +23844,6 @@ xref: ICD9CM:282.43
xref: MSH:D017085
xref: NCI:C34368
xref: OMIM:141750
xref: OMIM:141800
xref: OMIM:301040
xref: OMIM:604131
xref: OMIM:613978
@@ -34891,7 +34880,6 @@ xref: MSH:D013683
xref: NCI:C35064
xref: OMIM:187300
xref: OMIM:600376
xref: OMIM:600655
xref: OMIM:601101
xref: OMIM:615506
xref: ORDO:774
@@ -35832,7 +35820,6 @@ xref: OMIM:300496
xref: OMIM:300830
xref: OMIM:300847
xref: OMIM:300872
xref: OMIM:606059
xref: OMIM:607373
xref: OMIM:608049
xref: OMIM:608636
@@ -47235,7 +47222,6 @@ xref: OMIM:604232
xref: OMIM:604393
xref: OMIM:604537
xref: OMIM:608553
xref: OMIM:610142
xref: OMIM:610612
xref: OMIM:611755
xref: OMIM:612712
@@ -54536,7 +54522,6 @@ xref: MSH:D004612
xref: NCI:C35882
xref: NCI:C36293
xref: OMIM:130600
xref: OMIM:225450
xref: OMIM:611804
xref: ORDO:288
xref: SNOMEDCT_US_2015_03_01:154801000
@@ -58831,7 +58816,6 @@ synonym: "deficiency of G-6PD" EXACT [SNOMEDCT_2005_07_31:124134002]
synonym: "Glucose-6-phosphate dehydrogenase deficiency" EXACT [SNOMEDCT_2005_07_31:62403005]
xref: MSH:D005955
xref: NCI:C98933
xref: OMIM:305900
xref: SNOMEDCT_US_2015_03_01:124134002
xref: SNOMEDCT_US_2015_03_01:154738008
xref: SNOMEDCT_US_2015_03_01:267498002
@@ -79866,7 +79850,6 @@ subset: DO_MGI_slim
xref: MSH:D013584
xref: NCI:C3400
xref: OMIM:300813
xref: OMIM:312820
xref: SNOMEDCT_US_2015_03_01:302851001
xref: SNOMEDCT_US_2015_03_01:63211008
xref: UMLS_CUI:C0039101
@@ -92445,7 +92428,6 @@ xref: EFO:0000621
xref: MSH:D009447
xref: NCI:C3270
xref: OMIM:256700
xref: OMIM:610317
xref: OMIM:613013
xref: OMIM:613014
xref: OMIM:613015
@@ -95224,7 +95206,6 @@ xref: OMIM:612968
xref: OMIM:613887
xref: OMIM:614422
xref: OMIM:614691
xref: OMIM:614697
xref: OMIM:615188
xref: OMIM:615274
xref: OMIM:615277
@@ -97063,7 +97044,7 @@ xref: MSH:D008305
xref: NCI:C84869
xref: OMIM:145600
xref: OMIM:154275
xref: OMIM:154576
xref: OMIM:154276
xref: OMIM:600467
xref: OMIM:601887
xref: OMIM:601888
@@ -105577,7 +105558,6 @@ xref: OMIM:193003
xref: OMIM:300589
xref: OMIM:300814
xref: OMIM:608345
xref: OMIM:610700
xref: OMIM:614826
xref: ORDO:651
xref: SNOMEDCT_US_2015_03_01:155205009
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