Obsolete 'benign struma ovarii' and merge with 'struma ovarii'

DiseaseOntology · Nov 7, 2023 · a8d48c4 · a8d48c4
1 parent 8634e4d
commit a8d48c4
Showing 1 changed file with 10 additions and 8 deletions.
diff --git a/src/ontology/doid-edit.owl b/src/ontology/doid-edit.owl
@@ -142058,18 +142058,20 @@ SubClassOf(obo:DOID_264 obo:DOID_3850)
 
 # Class: obo:DOID_2640 (struma ovarii)
 
-AnnotationAssertion(Annotation(oboInOwl:hasDbXref "url:https://www.ncbi.nlm.nih.gov/pubmed/26374222") obo:IAO_0000115 obo:DOID_2640 "An ovarian germ cell monodermal and highly specialized teratoma that is composed either exclusively or predominantly of thyroid tissue.")
+AnnotationAssertion(Annotation(dc:type obo:ECO_0007645) Annotation(oboInOwl:hasDbXref "url:https://www.ncbi.nlm.nih.gov/pubmed/25640097") Annotation(oboInOwl:hasDbXref "url:https://www.ncbi.nlm.nih.gov/pubmed/26374222") obo:IAO_0000115 obo:DOID_2640 "An ovarian benign neoplasm that is composed either exclusively or predominantly of thyroid tissue.")
+AnnotationAssertion(oboInOwl:hasAlternativeId obo:DOID_2640 "DOID:5209")
 AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_2640 "ICDO:9090/0")
 AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_2640 "MESH:D013330")
 AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_2640 "NCI:C7468")
 AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_2640 "SNOMEDCT_US_2023_03_01:24327009")
 AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_2640 "UMLS_CUI:C0038478")
 AnnotationAssertion(oboInOwl:hasOBONamespace obo:DOID_2640 "disease_ontology")
+AnnotationAssertion(oboInOwl:hasRelatedSynonym obo:DOID_2640 "benign struma ovarii")
 AnnotationAssertion(oboInOwl:id obo:DOID_2640 "DOID:2640")
 AnnotationAssertion(oboInOwl:inSubset obo:DOID_2640 doid:DO_cancer_slim)
 AnnotationAssertion(oboInOwl:inSubset obo:DOID_2640 doid:NCIthesaurus)
 AnnotationAssertion(rdfs:label obo:DOID_2640 "struma ovarii")
-SubClassOf(obo:DOID_2640 obo:DOID_2641)
+SubClassOf(obo:DOID_2640 obo:DOID_0060112)
 
 # Class: obo:DOID_2641 (ovarian germ cell monodermal and highly specialized teratoma)
 
@@ -167557,17 +167559,17 @@ AnnotationAssertion(oboInOwl:hasOBONamespace obo:DOID_5208 "disease_ontology")
 AnnotationAssertion(oboInOwl:id obo:DOID_5208 "DOID:5208")
 AnnotationAssertion(oboInOwl:inSubset obo:DOID_5208 doid:NCIthesaurus)
 AnnotationAssertion(rdfs:label obo:DOID_5208 "malignant struma ovarii")
-SubClassOf(obo:DOID_5208 obo:DOID_2640)
+SubClassOf(obo:DOID_5208 obo:DOID_2641)
 
-# Class: obo:DOID_5209 (benign struma ovarii)
+# Class: obo:DOID_5209 (obsolete benign struma ovarii)
 
 AnnotationAssertion(Annotation(dc:type obo:ECO_0007645) Annotation(oboInOwl:hasDbXref "url:https://www.ncbi.nlm.nih.gov/pubmed/25640097") obo:IAO_0000115 obo:DOID_5209 "An ovarian benign neoplasm struma ovarii that is not cancerous and that is composed either exclusively or predominantly of thyroid tissue.")
+AnnotationAssertion(obo:IAO_0100001 obo:DOID_5209 obo:DOID_2640)
 AnnotationAssertion(oboInOwl:hasOBONamespace obo:DOID_5209 "disease_ontology")
 AnnotationAssertion(oboInOwl:id obo:DOID_5209 "DOID:5209")
-AnnotationAssertion(oboInOwl:inSubset obo:DOID_5209 doid:NCIthesaurus)
-AnnotationAssertion(rdfs:comment obo:DOID_5209 "Obsoleted xrefs (version): NCI:C40012 (29.08d), UMLS_CUI:C1511104 (2023AA).")
-AnnotationAssertion(rdfs:label obo:DOID_5209 "benign struma ovarii")
-SubClassOf(obo:DOID_5209 obo:DOID_0060112)
+AnnotationAssertion(rdfs:comment obo:DOID_5209 "Obsoleted in conjunction with obsoletion of corresponding cross-references (version): NCI:C40012 (29.08d), UMLS_CUI:C1511104 (2023AA). 'struma ovarii' is considered benign making this term redundant.")
+AnnotationAssertion(rdfs:label obo:DOID_5209 "obsolete benign struma ovarii")
+AnnotationAssertion(owl:deprecated obo:DOID_5209 "true"^^xsd:boolean)
 
 # Class: obo:DOID_5212 (congenital disorder of glycosylation)