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[WIP] Add workflow for benchmark run and docs build #9

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68 changes: 68 additions & 0 deletions .github/workflows/build.yml
Original file line number Diff line number Diff line change
@@ -0,0 +1,68 @@
name: Build benchmark docs

on:
push:
branches:
- main
pull_request:
branches:
- main

jobs:
build:
runs-on: ubuntu-latest

steps:
#- name: Check out data repository
# uses: actions/checkout@v2
# with:
# repository: //<insert your repository here>
# token: ${{ secrets.GIT_TOKEN }}

- uses: actions/checkout@v2

- name: Set up Python 3.10
uses: actions/setup-python@v2
with:
python-version: '3.9'
Comment on lines +24 to +27
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Probably a small typo but should this be:

Suggested change
- name: Set up Python 3.10
uses: actions/setup-python@v2
with:
python-version: '3.9'
- name: Set up Python 3.9
uses: actions/setup-python@v2
with:
python-version: '3.9'


- name: Cache Pip dependencies
uses: actions/cache@v2
with:
path: ~/.cache/pip
key: ${{ runner.os }}-pip-${{ hashFiles('**/requirements.txt') }}
restore-keys: |
${{ runner.os }}-pip-

- name: Install dependencies
run: |
python -m pip install --upgrade pip
pip install -r requirements.txt

- name: Run tests
run: |
python -m pytest tests

- name: Check data
id: check-data
run: |
RESULT=$(find data -type f)
echo "::set-output name=check-data::$RESULT"
echo "${RESULT}"
shell: bash

- name: Verify data
run: |
sample_output="data/CollectedData_Mackenzie.h5 data/CollectedData_Daniel.h5 data/CollectedData_Valentina.h5 data/CollectedData_Mostafizur.h5"
if [ "${{ steps.check-data.outputs.check-data }}" != "$sample_output" ]; then
echo "Data check failed"
exit 1
fi

- name: Run benchmark
run: |
python -m benchmark

- name: Build documentation
run: |
make deploy
2 changes: 2 additions & 0 deletions requirements.txt
Original file line number Diff line number Diff line change
Expand Up @@ -34,3 +34,5 @@ tabulate==0.8.9
urllib3==1.26.6
sphinx_autodoc_typehints
sphinx_copybutton
deeplabcut[tf]
pytest
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