Modify error messages slightly

src/call.rs

@@ -38,6 +38,8 @@ pub fn consensus(
     duplicates_only: bool,
     output_originals: bool,
 ) -> Result<()> {
+    info!("Creating thread pool with {threads} threads");
+
     rayon::ThreadPoolBuilder::new()
         .num_threads(threads)
         .build_global()?;
@@ -60,7 +62,7 @@ pub fn consensus(
             idx += 1;
 
             if (idx > 0) && (idx % 100000 == 0) {
-                eprintln!("Called {} reads...", idx);
+                info!("Called {} reads...", idx);
             }
 
             let single = group.records.len() == 1;

src/duplicates.rs

@@ -147,6 +147,8 @@ impl IndexReader {
     ///
     /// This function will return an error if the file cannot be opened or read, or if the file format is incorrect.
     pub fn get_duplicates(&mut self) -> Result<(DuplicateMap, DuplicateStatistics)> {
+        info!("Reading index file...");
+
         let mut map = DuplicateMap::new();
 
         let mut stats = DuplicateStatistics {
@@ -199,6 +201,8 @@ impl IndexReader {
 
         stats.proportion_duplicate = stats.duplicate_reads as f64 / stats.total_reads as f64;
 
+        info!("Generated duplicate map from index file");
+
         Ok((map, stats))
     }
 }