Skip to content

Commit

Permalink
Minor edits.
Browse files Browse the repository at this point in the history
  • Loading branch information
JanCBrammer committed Dec 6, 2023
1 parent e57bf68 commit e02e68e
Showing 1 changed file with 15 additions and 12 deletions.
27 changes: 15 additions & 12 deletions docs/eln/ui/elements/cell_lines.mdx
Original file line number Diff line number Diff line change
Expand Up @@ -5,11 +5,11 @@ sidebar_position: 4

## Meaning

A cell line is a general term defining specific population of cells that can maintain in vitro culture for an extended period of time, and is usually clonal meaning that the entire population originated from a single, common, ancestor cell. <sup>1</sup>
A cell line is a population of cells that can maintain in vitro culture for an extended period of time, and is usually clonal, meaning that the entire population originated from a single, common ancestor cell. <sup>1</sup>

## Model

A cell line object in Chemotion ELN is divided into a conceptual and a physical part. The conceptual part describes general information like the name of the cell line, the origin or the source organism. The physical part describes a concrete realization of the conceptual part and can be seen as a real object with properties like number, location or current passage. Multiple physical objects can share the same conceptual part.
A cell line in Chemotion ELN is divided into a conceptual and a physical part. The conceptual part describes general information like the name of the cell line, the origin or the source organism. The physical part describes a concrete realization of the conceptual part and can be seen as a real object with properties like number, location or current passage. Multiple physical objects can share the same conceptual part.

## Representation in ELN

Expand All @@ -32,7 +32,7 @@ name and the source. Additional information can be made visible or hidden by tog
3. Button to hide or show additional information
4. Button to show or hide elements of the group

All other buttons or functionalities (such as the time restriction of the cell lines, visibility/position of the element tab) function in the same way as the other elements of the ELN
All other buttons or functionalities (such as the time restriction of the cell lines, visibility/position of the element tab) function in the same way as the other elements of the ELN.

### Detailed view

Expand All @@ -43,7 +43,7 @@ All other buttons or functionalities (such as the time restriction of the cell l
alt={"Common properties"}
/>

The properties tab describes the properties of the conceptual area of the cell lines (common properties) and the properties of the physical area (item specific properties).
The properties tab describes the conceptual properties of the cell lines (common properties) as well as the physical properties (item specific properties).

The following properties can be defined in the common properties area:

Expand All @@ -53,18 +53,18 @@ The following properties can be defined in the common properties area:
|source |the source of the original cell line|no |
|disease |Disease which is present in the cells|yes |
|organism|Donor organism of the cells|yes|
|tissue|tissue from what the cells are extracted|yes|
|tissue|tissue from which the cells are extracted|yes|
|growth medium||yes|
|mutation|any known mutation of the cell line|yes|
|variant|any variant of the cell line|yes|
|biosafety level|the biosafety level of the cells|no|
|cryopreservation medium||yes|
|opt. growth temperature|in degrees celcius|yes|
|opt. growth temperature|in degrees celsius|yes|
|gender|gender of the donor organism|yes|
|cell type|type of the cell|yes|
|description|any aditional information|yes|
|description|any additional information|yes|

When selecting the name of the cell lines, the user is supported by a preselection of existing cell lines. It is also possible to create new cell line names.
When selecting the name of the cell lines, the user is supported by a pre-selection of existing cell lines. It is also possible to create new cell line names.
<img
src={require("@site/static/img/user_interface/elements/cell_lines/20231204_cell_line_details_2.png").default}
alt={"Item specific properties"}
Expand All @@ -78,12 +78,12 @@ property name |description |optional|
|unit|predefined or custom unit of amount|yes |
|contamination |any known contamination of cell line sample|yes |
|name of specific probe|can be used to identify specific probes|yes |
|description|any aditional information|yes|
|description|any additional information|yes|

The representation of the amount can be switched with <img
The representation of the amount can be switched with the <img
src={require("@site/static/img/user_interface/elements/cell_lines/20231204_cell_line_details_button.png").default}
alt={"Item specific properties"}
/>
/> button.

#### Analyses tab

Expand All @@ -103,7 +103,10 @@ The references are linked to the conceptual part of the cell line instead to the

Cell lines can be generated in several ways:

1. By selecting a collection, a new cell line can be created in this collection using the button in the top menu
1. By selecting a collection, a new cell line can be created in this collection using the <img
src={require("@site/static/img/user_interface/elements/cell_lines/20231204_cell_line_create_button.png").default}
alt={"Item specific properties"}
/> button in the top menu.

2. The button <img
src={require("@site/static/img/user_interface/elements/cell_lines/20231204_cell_line_create_button.png").default}
Expand Down

0 comments on commit e02e68e

Please sign in to comment.