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v1.10.1 PR#399

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mart-r merged 59 commits intoproductionCogStack/MedCAT:productionfrom masterCogStack/MedCAT:masterCopy head branch name to clipboardFeb 13, 2024

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Commits on Oct 3, 2023

• Bump urllib3 from 1.26.5 to 1.26.17 in /webapp/webapp

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Commits on Oct 10, 2023

• Merge pull request #351 from CogStack/dependabot/pip/webapp/webapp/urllib3-1.26.17

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Commits on Oct 20, 2023

• Cu 8692wbcq5 docs builds (#359)

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• Bump urllib3 from 1.26.17 to 1.26.18 in /webapp/webapp

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Commits on Oct 30, 2023

• CU-8692uznvd: Allow empty-dict config.linking.filters.cuis and convert to set in memory (#352)

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• CU-8692t3fdf separate config on save (#350)

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Commits on Oct 31, 2023

• CU-2cdpd4t: Unify default addl_info in different methdos. (#363)

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Commits on Nov 2, 2023

• Bump django from 3.2.20 to 3.2.23 in /webapp/webapp

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Commits on Nov 3, 2023

• Changing cdb.add_concept to a protected method

  

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Commits on Nov 6, 2023

• Re-added deprecated method with deprecated flag and addtional comments

  

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Commits on Nov 22, 2023

• Initial commit for merge_cdb method

  

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• Added indentation to make merge_cdb a class method

  

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Commits on Nov 23, 2023

• fixed syntax issues

  

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• more lint fixes

  

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• more lint fixes

  

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• bug fixes of merge_cdb

  

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• removed print statements

  

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Commits on Nov 27, 2023

• CU-86931prq4: Update GHA versions (checkout and setup-python) to v4 (#368)

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• Cu 1yn0v9e duplicate multiprocessing methods (#364)

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• Merge pull request #370 from CogStack/protected-add_concept

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Commits on Nov 29, 2023

• 869377m3u: Add comment regarding demo link load times to README (#376)

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• intermediate changes of merge_cdb and testing function

  

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Commits on Nov 30, 2023

• Added README.md documentation for CPU only installations (#365)

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• Cu 8692zguyq no preferred name (#367)

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Commits on Dec 5, 2023

• Add trainer callbacks for Transformer NER (#377)

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Commits on Dec 11, 2023

• changes to merge_cdb and adding unit tests for method

  

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• resolves merge conflict of imports

  

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Commits on Dec 12, 2023

• fixing lint issues

  

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• fixing flake8 linting

  

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Commits on Dec 13, 2023

• Merge pull request #369 from CogStack/dependabot/pip/webapp/webapp/django-3.2.23

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• Merge pull request #360 from CogStack/dependabot/pip/webapp/webapp/urllib3-1.26.18

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• bug fixes, additional tests, and more documentation

  

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• moved set up of cdbs to be merged to tests.helper

  

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Commits on Dec 14, 2023

• moved merge_cdb to utils and created test_cdb_utils

  

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Commits on Dec 15, 2023

• removed class wrapper in cdb utils and fixed class set up in tests

  

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• changed test object setup to class setup

  

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• removed erroneous new line

  

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Commits on Dec 18, 2023

• CU-2e77a31 improve print stats (#366)

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• Load stopwords in Defaults before spacy model

  

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• Merge pull request #373 from CogStack/CU2e77a5x-cdb-merge-function

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• CU-8693az82g Remove cdb tests side effects (#380)

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• Added tests

  

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Commits on Dec 21, 2023

• CU-8693bpq82 fallback spacy model (#384)

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Commits on Dec 22, 2023

• Remove tests of internals where possible

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• Add test for skipping of stopwords

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• Avoid supporting only English for stopwords

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• Merge branch 'master' into stopwords-loading-fix

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• Remove debug output

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• Make sure stopwords language getter works for file-path spacy models

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Commits on Jan 2, 2024

• Merge pull request #1 from CogStack/stopwords-loading-fix

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Commits on Jan 3, 2024

• Merge pull request #383 from uclh-criu/stopwords-loading-fix

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Commits on Jan 8, 2024

• CU-8693cv3w0 Fix fallback spacy model existance on pip installs (#386)

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• CU-8693b0a61 Add method to get spacy model version (#381)

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Commits on Jan 29, 2024

• CU-8693kp0gw: Pin more recent versions for major dependencies; Avoid major bumps where applicable (#392)

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Commits on Jan 30, 2024

• add: metacat can predict on spans in arbitrary spangroups (#391)

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Commits on Feb 8, 2024

• CU-8693ruk7p: Bump mypy version in dev-requirements (#396)

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Commits on Feb 12, 2024

• Bump django from 3.2.23 to 3.2.24 in /webapp/webapp (#395)

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• CU-8693t24ed: Add workaround for older DeID models in newer MedCAT (#397)

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• CU-2hz5ump deid mulitprocessing (#393)

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