Seems to work fine

Clinical-Genomics · Dec 17, 2024 · f9a974d · f9a974d
1 parent c33a587
commit f9a974d
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Showing 2 changed files with 4 additions and 2 deletions.
diff --git a/schug/load/biomart.py b/schug/load/biomart.py
@@ -44,7 +44,6 @@ def create_biomart_xml(
         filters: dict, attributes: List[str], header: Optional[bool]
     ) -> str:
         """Convert Ensembl Biomart query parameters into a XML format Ensembl Biomart query."""
-        LOG.warning(f"header is -->{header}")
         filter_lines: List[str] = EnsemblXML.xml_filters(filters)
         attribute_lines = EnsemblXML.xml_attributes(attributes)
         xml_lines = [

diff --git a/schug/load/ensembl.py b/schug/load/ensembl.py
@@ -26,7 +26,10 @@ def fetch_ensembl_biomart(
     build = build or "37"
 
     client = EnsemblBiomartClient(
-        build=build, filters=filters, attributes=attributes, header="1" in filters
+        build=build,
+        filters=filters,
+        attributes=attributes,
+        header="1" in filters["chromosome_name"],
     )
     LOG.info("Selecting attributes: %s", ", ".join(attributes))
     LOG.info("Use filter: %s", filters)