Workaround to download all exons from the latest Ensembl BioMart #89
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Publish to Docker - stage | |
| on: | |
| pull_request: | |
| branches: | |
| - main | |
| jobs: | |
| docker-stage-push: | |
| name: Create staging docker image | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Check out git repository | |
| uses: actions/checkout@v4 | |
| - name: Get branch name | |
| id: branch-name | |
| uses: tj-actions/branch-names@v7 | |
| - name: Login to Docker Hub | |
| uses: docker/login-action@v3 | |
| with: | |
| username: ${{ secrets.DOCKER_USERNAME }} | |
| password: ${{ secrets.DOCKER_PASSWORD }} | |
| - name: Set up Docker Buildx | |
| id: buildx | |
| uses: docker/setup-buildx-action@v3 | |
| - name: Set up QEMU | |
| uses: docker/setup-qemu-action@v3 | |
| - name: Build and push | |
| if: steps.branch-name.outputs.is_default == 'false' | |
| uses: docker/build-push-action@v5 | |
| with: | |
| context: ./ | |
| file: ./Dockerfile | |
| push: true | |
| tags: "clinicalgenomics/schug-stage:${{steps.branch-name.outputs.current_branch}}, clinicalgenomics/schug-stage:latest" |