Modify genes table converting the ensembl_id string field to ensembl_ids: an array of strings

[northwestwitch]

Description

Added/Changed/Fixed

• Fix Using non-unique or partial keys as foreign keys in a CREATE TABLE or ALTER TABLE statement is deprecated -> Bug when creating genes table #392

How to test

• Automatic tests
• Deploy on stage server and run different tests for the reports

Expected outcome

• All reports should return the same values as on main branch

Review

• Tests executed by CR
• "Merge and deploy" approved by

This version is a

• MAJOR - when you make incompatible API changes
• MINOR - when you add functionality in a backwards compatible manner
• PATCH - when you make backwards compatible bug fixes or documentation/instructions

[codecov-commenter]

Codecov Report

Attention: Patch coverage is 62.96296% with 20 lines in your changes missing coverage. Please review.

Project coverage is 92.22%. Comparing base (6fcdf37) to head (1e1eafa).
Report is 1 commits behind head on main.

Files with missing lines	Patch %	Lines
src/chanjo2/meta/handle_d4.py	30.76%	18 Missing ⚠️
src/chanjo2/crud/intervals.py	90.90%	1 Missing ⚠️
src/chanjo2/meta/handle_load_intervals.py	87.50%	1 Missing ⚠️

Additional details and impacted files

@@            Coverage Diff             @@
##             main     #394      +/-   ##
==========================================
- Coverage   92.60%   92.22%   -0.38%     
==========================================
  Files          31       31              
  Lines        1514     1531      +17     
==========================================
+ Hits         1402     1412      +10     
- Misses        112      119       +7     

Flag	Coverage Δ
unittests	92.22% <62.96%> (-0.38%)	⬇️

Flags with carried forward coverage won't be shown. Click here to find out more.

☔ View full report in Codecov by Sentry.
📢 Have feedback on the report? Share it here.

[northwestwitch]

Testing this PR on stage:

• Drop the old database
• Create a new database
• Populate genes (build 37)

• Populate transcripts (build 37)

• Populate exons (build 37)

• Create coverage report using a gene panel from scout

Main branch:

This branch:

• Create a panel coverage overview

• Create a gene coverage overview

Main branch:

This branch:

• All reports should contain the same stats as before the change in the database

[sonarqubecloud]

Quality Gate passed

Issues
0 New issues
0 Accepted issues

Measures
0 Security Hotspots
0.0% Coverage on New Code
0.0% Duplication on New Code

See analysis details on SonarQube Cloud