Merge pull request #348 from Clinical-Genomics/colored_logs_again

Fixed colors in logging

CHANGELOG.md

@@ -13,6 +13,7 @@
 ### Fixed
 - Updated dependencies including `certifi` to address dependabot alert
 - Update pytest to v.7.4.4 to address a `ReDoS` vulnerability
+- Colored logs
 
 ## [1.9]
 ### Added

pyproject.toml

@@ -26,6 +26,7 @@ python-multipart = "^0.0.9"
 schug = "1.6.0"
 certifi = "^2024.7.4"
 pytest = "7.4.4"
+coloredlogs = "^15.0.1"
 
 [tool.poetry.extras]
 m1 = ["pyd4"]

src/chanjo2/logger.py

@@ -1,16 +1,11 @@
 import logging
 
-import uvicorn
+import coloredlogs
+from fastapi.applications import FastAPI
 
-LOG = logging.getLogger(__name__)
 
-
-def configure_log():
+def configure_log(log: logging.Logger, app: FastAPI):
     """Configure logging."""
-    console_formatter = uvicorn.logging.ColourizedFormatter(
-        "{levelprefix} {asctime} : {message}", style="{", use_colors=True
-    )
-    if LOG.handlers:
-        LOG.handlers[0].setFormatter(console_formatter)
-    else:
-        logging.basicConfig()
+
+    current_log_level = log.getEffectiveLevel()
+    coloredlogs.install(level="DEBUG" if app.debug else current_log_level)

src/chanjo2/main.py

@@ -28,7 +28,7 @@ def create_db_and_tables():
 
 @asynccontextmanager
 async def lifespan(app_: FastAPI):
-    configure_log()
+    configure_log(app=app, log=LOG)
     LOG.info("Starting up...")
     await startup_db()
     yield