Aplly only to transcripts

Clinical-Genomics · Oct 28, 2024 · 5a2f2d9 · 5a2f2d9
1 parent 7d7ab73
commit 5a2f2d9
Showing 1 changed file with 9 additions and 5 deletions.
diff --git a/src/chanjo2/meta/handle_d4.py b/src/chanjo2/meta/handle_d4.py
@@ -86,11 +86,15 @@ def get_report_sample_interval_coverage(
                         interval_hgnc_symbol,
                         interval_hgnc_id,
                         interval.ensembl_id,
-                        {
-                            "mane_select": interval.refseq_mane_select,
-                            "mane_plus_clinical": interval.refseq_mane_plus_clinical,
-                            "mrna": interval.refseq_mane_select,
-                        },
+                        (
+                            {
+                                "mane_select": interval.refseq_mane_select,
+                                "mane_plus_clinical": interval.refseq_mane_plus_clinical,
+                                "mrna": interval.refseq_mane_select,
+                            }
+                            if isinstance(interval, SQLTranscript)
+                            else {}
+                        ),
                         sample_name,
                         round(interval_coverage_at_threshold * 100, 2),
                     )