New EPP: Calculate ABC Reagent Volumes for Revio Sequencing

[idalindegaard]

Added

• New EPP Revio ABC Volumes

Changed

Fixed

Steps to consider while deploying

• Configuration changes:
• Documentation updates:
• Inform users by email:

Review:

• Code approved by
• Tests executed on stage by: (Document the test done with screen shots and description.)
• "Merge and deploy" approved by

This version is a:

• MAJOR - when you make incompatible API changes
• MINOR - when you add functionality in a backwards compatible manner
• PATCH - when you make backwards compatible bug fixes or documentation/instructions

[idalindegaard]

Testing on stage

EPP: Calculate Revio ABC Volumes

bash -c -l "conda activate cg_lims &&  lims -c /home/glsai/.genologics.yaml epps -l {compoundOutputFileLuid0} -p {processLuid} udf calculate revio-abc-volumes -v 'Volume (ul)' --factor 1.1 --annealing-reagent-ratio 0.5 --polymerase-buffer-ratio 1.88 --polymerase-dilution-mix-ratio 2 --sequencing-polymerase-ratio 0.12"

Volume ratios and calculations are seen in the table below

Volumes were successfully calculated and updated.

Error message when missing a value for Volume (ul):

EPP works successfully!

[idalindegaard]

Disclaimer: will remove stuff that's not needed in the step anymore :)

[Karl-Svard]

Very nice Ida! You've written a nice and concise script for a complex problem with several calculations and UDFs being set. I have some ideas that popped into my head, feel free to disregard them if you don't agree!