Transfer file2udf_quantit_qc to cg_lims

[Karl-Svard]

Added

• New EPP, cg_lims/EPPs/files/parsers/quantit_excel_to_udf.py
• New common functions in cg_lims/get/fields.py
• New common functions in cg_lims/get/artifacts.py

Changed

• Moved all parser EPPs into a common subdir, cg_lims/EPPs/files/parsers
• Refactored the CSV parser slightly, cg_lims/EPPs/files/parsers/file_to_udf.py

Steps to consider while deploying

• Configuration changes:
• Documentation updates:
• Inform users by email:

Review:

• Code approved by
• Tests executed on stage by: (Document the test done with screen shots and description.)
• "Merge and deploy" approved by

This version is a:

• MAJOR - when you make incompatible API changes
• MINOR - when you add functionality in a backwards compatible manner
• PATCH - when you make backwards compatible bug fixes or documentation/instructions

[Karl-Svard]

New EPP created in stage

1. Get Concentration from Result File (NEW)

bash -c -l "conda activate cg_lims && lims -c /home/glsai/.genologics.yaml epps -l {compoundOutputFileLuid0} -p {processLuid} files quantit-excel-to-udf --udf 'Concentration' --file 'Quantit Result File'"

Tests compared to the old script

Old success:

New success:

Old fail:

New fail: