PostDNA

A PostgreSQL extension to efficiently store and analyze DNA, KMER and QKMER sequences

TestingQueries.SQL Uses real data for testing.

Name		Name	Last commit message	Last commit date
Latest commit History 99 Commits
.DS_Store		.DS_Store
.gitignore		.gitignore
DBSA project presentation.pdf		DBSA project presentation.pdf
Data_Generation_and_Insertion.ipynb		Data_Generation_and_Insertion.ipynb
Makefile		Makefile
README.md		README.md
Real_Data_gen.ipynb		Real_Data_gen.ipynb
Results.ipynb		Results.ipynb
Test outputs.docx		Test outputs.docx
TestingQueries.SQL		TestingQueries.SQL
clean.sql		clean.sql
cleaned_query_data.xlsx		cleaned_query_data.xlsx
dna.c		dna.c
dna.h		dna.h
extracted_data.csv		extracted_data.csv
kmer.c		kmer.c
kmer.h		kmer.h
postdna--1.0.sql		postdna--1.0.sql
postdna.control		postdna.control
qkmer.c		qkmer.c
qkmer.h		qkmer.h
resources.txt		resources.txt
results.rtf		results.rtf
sequence.c		sequence.c
sequence.h		sequence.h
spgistkmer.c		spgistkmer.c
spgistkmer.h		spgistkmer.h
synthetic_data.fast		synthetic_data.fast
test_simple.sql		test_simple.sql

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