automatic formatting

triggered by @stelmo on PR #11
COBREXA · Feb 2, 2024 · 2d20619 · 2d20619
1 parent bc8193a
commit 2d20619
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Showing 2 changed files with 16 additions and 13 deletions.
diff --git a/src/builders/enzymes.jl b/src/builders/enzymes.jl
@@ -146,12 +146,12 @@ function enzyme_constraints(
     gene_product_molar_mass = _ -> 0.0,
     capacity_limits = [],
 )
-    # TODO: would be nice if directionally constrained 
-    
+    # TODO: would be nice if directionally constrained
+
     # might be nice to omit some conditionally (e.g. slash the direction if one
     # kcat is nothing)
     isozyme_amounts = isozyme_amount_variables(
-        [rid for rid in keys(fluxes) if !isnothing(isozyme_ids(rid))], 
+        [rid for rid in keys(fluxes) if !isnothing(isozyme_ids(rid))],
         rid -> isozyme_ids(rid),
     )
 
@@ -162,13 +162,10 @@ function enzyme_constraints(
             constraints.fluxes;
             positive = :fluxes_forward,
             negative = :fluxes_reverse,
-        ) + 
+        ) +
         :isozyme_forward_amounts^isozyme_amounts +
         :isozyme_reverse_amounts^isozyme_amounts +
-        :gene_product_amounts^C.variables(
-            keys = gene_ids,
-            bounds = C.Between(0, Inf),
-        )
+        :gene_product_amounts^C.variables(keys = gene_ids, bounds = C.Between(0, Inf))
 
     # connect all parts with constraints
     constraints *
@@ -195,8 +192,7 @@ function enzyme_constraints(
     :gene_product_capacity^C.ConstraintTree(
         Symbol(id) => C.Constraint(
             value = sum(
-                constraints.gene_product_amounts[gp].value *
-                gene_product_molar_mass(gp) for gp in gps
+                constraints.gene_product_amounts[gp].value * gene_product_molar_mass(gp) for gp in gps
             ),
             bound = C.Between(0, limit),
         ) for (id, gps, limit) in capacity_limits

diff --git a/src/frontend/enzymes.jl b/src/frontend/enzymes.jl
@@ -56,13 +56,20 @@ function enzyme_constrained_flux_balance_constraints(
 )
     # these functions should not fail gracefully to prevent user footguns
     # they take strings and but cts use symbols internally, hence lots of conversions are required - kind of annoying
-    isozyme_ids(rid) = haskey(reaction_isozymes, String(rid)) ? Symbol.(keys(reaction_isozymes[String(rid)])) : nothing
+    isozyme_ids(rid) =
+        haskey(reaction_isozymes, String(rid)) ?
+        Symbol.(keys(reaction_isozymes[String(rid)])) : nothing
     kcat_forward(rid, iso_id) = reaction_isozymes[String(rid)][String(iso_id)].kcat_forward
     kcat_reverse(rid, iso_id) = reaction_isozymes[String(rid)][String(iso_id)].kcat_reverse
-    isozyme_subunit_stoichiometry(rid, iso_id) = Dict(Symbol(k) => v for (k, v) in reaction_isozymes[String(rid)][String(iso_id)].gene_product_stoichiometry)
+    isozyme_subunit_stoichiometry(rid, iso_id) = Dict(
+        Symbol(k) => v for (k, v) in
+        reaction_isozymes[String(rid)][String(iso_id)].gene_product_stoichiometry
+    )
     gene_product_molar_mass(gid) = gene_product_molar_masses[String(gid)]
 
-    capacity_limits = capacity isa Real ? [("totalcapacity", Symbol.(A.genes(model)), capacity)] : capacity
+    capacity_limits =
+        capacity isa Real ? [("totalcapacity", Symbol.(A.genes(model)), capacity)] :
+        capacity
 
     enzyme_constraints(
         flux_balance_constraints(model);