Migrate to circle ci2

.circleci/config.yml

@@ -0,0 +1,132 @@
+version: 2
+
+checkout:
+  post:
+    - ./scripts/checkout_merge_commit.sh
+
+aliases:
+
+  - &setup_miniconda
+    name: setup_miniconda
+    command: |
+      mkdir -p workspace
+      git clone -b validateNightly [email protected]:CDAT/cdat workspace/cdat
+      ls workspace/cdat
+      python workspace/cdat/scripts/install_miniconda.py -w $WORKDIR -p 'py3'
+
+  - &create_conda_env
+    name: create_conda_env
+    command: |
+       export PATH=$HOME/project/$WORKDIR/miniconda/bin:$PATH
+       conda config --set always_yes yes --set changeps1 no
+       conda update -y -q conda
+       conda config --set anaconda_upload no
+       conda create -q -n py2 -c conda-forge hdf5 libnetcdf lapack clapack curl ossuuid gcc "python<3" "numpy>1.14"
+       conda create -q -n py3 -c conda-forge hdf5 libnetcdf lapack clapack curl ossuuid gcc "python>3" "numpy>1.14"
+       if [ $(uname) == "Linux" ]; then
+           conda install -n py3 -c cdat/label/unstable -c cdat/label/nightly -c conda-forge gcc_linux-64
+           conda install -n py2 -c cdat/label/unstable -c cdat/label/nightly -c conda-forge gcc_linux-64
+       else
+           conda install -n py3 -c cdat/label/unstable -c cdat/label/nightly -c conda-forge gcc
+           conda install -n py2 -c cdat/label/unstable -c cdat/label/nightly -c conda-forge gcc
+       fi
+
+       source activate py2
+       conda list
+
+  - &run_libcf_tests
+    name: run_libcf_tests
+    command: |
+       export PATH=$WORKDIR/miniconda/bin:$PATH
+       echo "CIRCLE CI BRANCH: "$CIRCLE_BRANCH
+       echo "CI_PULL_REQUESTS: "$CI_PULL_REQUESTS
+       echo "CI_PULL_REQUEST: "$CI_PULL_REQUEST
+       export CFLAGS="-Wall -m64 -pipe -O2  -fPIC ${CFLAGS}"
+       export CXXFLAGS="${CFLAGS} ${CXXFLAGS}"
+       export LFLAGS="-fPIC ${LFLAGS}"
+       # somehow looks for fortran but doesn't seem to need it it's pure C
+       # looking for fortran makes mac fail
+       source activate base
+       export FC="" 
+       pwd
+       ls
+       echo "xxx running configure py2"
+       source activate py2
+       export PREFIX=$CONDA_PREFIX
+       export CPPFLAGS="-I${PREFIX}/include ${CPPFLAGS}"
+       export LDFLAGS="-L${PREFIX}/lib ${LDFLAGS}"
+       ./configure --prefix=${PREFIX}
+       echo "xxx running python install"
+       if [ $(uname) == "Linux" ]; then
+           LDSHARED="$CC -shared -pthread" python setup.py install
+       else
+           python setup.py install
+       fi
+       echo "xxx running configure py3"
+       source activate py3
+       export PREFIX=$CONDA_PREFIX
+       export CPPFLAGS="-I${PREFIX}/include ${CPPFLAGS}"
+       export LDFLAGS="-L${PREFIX}/lib ${LDFLAGS}"
+       ./configure --prefix=${PREFIX}
+       echo "xxx running python install"
+       if [ $(uname) == "Linux" ]; then
+           LDSHARED="$CC -shared -pthread" python setup.py install
+       else
+           python setup.py install
+       fi
+       echo "py3 test command exit result:",$RESULT
+
+  - &upload_libcf
+    name: upload_libcf
+    command: |
+       export PATH=$HOME/project/$WORKDIR/miniconda/bin:$PATH
+       if [ $CIRCLE_BRANCH == "master" ]; then conda install -n root conda-build anaconda-client ; fi
+       if [ $CIRCLE_BRANCH == "master" ]; then bash ./ci-support/conda_upload.sh ; fi
+       if [ $CIRCLE_BRANCH != "master" ]; then
+           export LABEL="unstable";
+           conda install -n root conda-build anaconda-client;
+           bash ./ci-support/conda_upload.sh;
+       fi
+
+
+
+jobs:
+  macos_libcf:
+    macos:
+      xcode: "9.2.0"
+    environment:
+      WORKDIR: "workspace/test_macos_libcf"
+    steps:
+      - checkout
+      - run: *setup_miniconda
+      - run: *create_conda_env
+      - run: *run_libcf_tests
+      - run: *upload_libcf
+
+  linux_libcf:
+    machine:
+      image: circleci/classic:latest
+    environment:
+      WORKDIR: "workspace/test_linux_libcf"
+    steps:
+      - checkout
+      - run: *setup_miniconda
+      - run: *create_conda_env
+      - run: *run_libcf_tests
+      - run: *upload_libcf
+      - store_artifacts:
+          path: tests_html
+          destination: tests_html
+      - store_artifacts:
+          path: tests_png
+          destination: tests_png
+
+workflows:
+  version: 2 
+  libcf:
+      jobs:
+        - macos_libcf
+        - linux_libcf
+
+
+

aclocal.m4

@@ -14,8 +14,8 @@
 
 m4_ifndef([AC_AUTOCONF_VERSION],
   [m4_copy([m4_PACKAGE_VERSION], [AC_AUTOCONF_VERSION])])dnl
-m4_if(m4_defn([AC_AUTOCONF_VERSION]), [2.68],,
-[m4_warning([this file was generated for autoconf 2.68.
+m4_if(m4_defn([AC_AUTOCONF_VERSION]), [2.69],,
+[m4_warning([this file was generated for autoconf 2.69.
 You have another version of autoconf.  It may work, but is not guaranteed to.
 If you have problems, you may need to regenerate the build system entirely.
 To do so, use the procedure documented by the package, typically `autoreconf'.])])

cf_config.h

@@ -21,10 +21,10 @@
 
 /* Define to a macro mangling the given C identifier (in lower and upper
    case), which must not contain underscores, for linking with Fortran. */
-#define FC_FUNC(name,NAME) name ## _
+/* #undef FC_FUNC */
 
 /* As FC_FUNC, but for C identifiers containing underscores. */
-#define FC_FUNC_(name,NAME) name ## _
+/* #undef FC_FUNC_ */
 
 /* Define to 1 if you have `alloca', as a function or macro. */
 #define HAVE_ALLOCA 1
@@ -120,7 +120,7 @@
 #define PACKAGE_NAME "libcf"
 
 /* Define to the full name and version of this package. */
-#define PACKAGE_STRING "libcf 1.0-beta11"
+#define PACKAGE_STRING "libcf 1.0-beta12"
 
 /* Define to the one symbol short name of this package. */
 #define PACKAGE_TARNAME "libcf"
@@ -129,7 +129,7 @@
 #define PACKAGE_URL ""
 
 /* Define to the version of this package. */
-#define PACKAGE_VERSION "1.0-beta11"
+#define PACKAGE_VERSION "1.0-beta12"
 
 /* The size of `double', as computed by sizeof. */
 #define SIZEOF_DOUBLE 8
@@ -164,7 +164,7 @@
 /* #undef USE_PARALLEL */
 
 /* Version number of package */
-#define VERSION "1.0-beta11"
+#define VERSION "1.0-beta12"
 
 /* Define WORDS_BIGENDIAN to 1 if your processor stores words with the most
    significant byte first (like Motorola and SPARC, unlike Intel). */

ci-support/conda_upload.sh

@@ -0,0 +1,34 @@
+#!/usr/bin/env bash
+PKG_NAME=libcf
+USER=cdat
+export VERSION="3.0"
+echo "Trying to upload to conda"
+echo ""
+echo "Activating base env"
+source activate base
+echo "Making sure conda-build is installed"
+conda install "conda-build<3.10"
+echo "Updating conda"
+conda update -y -q conda
+if [ `uname` == "Linux" ]; then
+    OS=linux-64
+    echo "Linux OS"
+else
+    echo "Mac OS"
+    OS=osx-64
+fi
+
+mkdir ~/conda-bld
+conda config --set anaconda_upload no
+export CONDA_BLD_PATH=${HOME}/conda-bld
+echo "Cloning recipes"
+git clone git://github.com/CDAT/conda-recipes
+cd conda-recipes
+# uvcdat creates issues for build -c uvcdat confises package and channel
+rm -rf uvcdat
+export BRANCH=${CIRCLE_BRANCH}
+python ./prep_for_build.py  -b ${BRANCH}
+
+conda build $PKG_NAME -c conda-forge -c cdat -c uvcdat --python=27
+conda build $PKG_NAME -c cdat/label/nightly -c conda-forge -c cdat -c uvcdat --python=3.6
+anaconda -t $CONDA_UPLOAD_TOKEN upload -u $USER -l $LABEL $CONDA_BLD_PATH/$OS/$PKG_NAME-$VERSION.`date +%Y*`0.tar.bz2 --force