Panic on unpaired read

BimberLab · Jan 31, 2025 · ea79420 · ea79420
1 parent e6db4a8
commit ea79420
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/src/parse/sorted_bam_reader.rs b/src/parse/sorted_bam_reader.rs
@@ -41,7 +41,7 @@ impl SortedBamReader {
             };
 
             if !record.is_paired() {
-                continue;
+                panic!("Error: found unpaired read, cannot run nimble in paired-end mode. Exiting.");
             }
 
             match record.aux(b"CB") {