Update github action R and bioc versions (#122)

* Update github action R and bioc versions
BimberLab · Nov 12, 2024 · b2f127d · b2f127d
1 parent b54e27e
commit b2f127d
Showing 1 changed file with 4 additions and 3 deletions.
diff --git a/.github/workflows/R-CMD-check.yaml b/.github/workflows/R-CMD-check.yaml
@@ -20,9 +20,9 @@ jobs:
       fail-fast: false
       matrix:
         config:
-          - {os: 22.04, r: 'devel', bioc: 'devel'}
+          #- {os: 24.04, r: 'devel', bioc: 'devel'}
+          - {os: 24.04, r: '4.4', bioc: '3.20'}
           - {os: 22.04, r: '4.3', bioc: '3.18'}
-          - {os: 22.04, r: '4.3', bioc: '3.17'}
 
     env:
       R_REMOTES_NO_ERRORS_FROM_WARNINGS: true
@@ -42,8 +42,9 @@ jobs:
       - name: Install packages
         if: runner.os != 'Windows'
         # libharfbuzz-dev libfribidi-dev are added to fix textshaping install error
+        # libglpk-dev added due to igraph / bluster /scran error
         run: |
-          sudo apt-get update && sudo apt-get install -yq libharfbuzz-dev libfribidi-dev python3 python3-pip libhdf5-dev libcurl4-openssl-dev
+          sudo apt-get update && sudo apt-get install -yq libharfbuzz-dev libfribidi-dev python3 python3-pip libhdf5-dev libcurl4-openssl-dev libglpk-dev
           python3 -m pip install --upgrade pip
           python3 -m pip install --user celltypist
           python3 -c 'import celltypist'