Remove special-case of seurat object (#110)

BimberLab · Jan 31, 2024 · 1399c75 · 1399c75
1 parent 23acb10
commit 1399c75
Show file tree

Hide file tree

Showing 2 changed files with 1 addition and 5 deletions.
diff --git a/.github/workflows/R-CMD-check.yaml b/.github/workflows/R-CMD-check.yaml
@@ -91,8 +91,6 @@ jobs:
           remotes::install_deps(dependencies = TRUE, upgrade = "always")
           install.packages("pkgdown")
           remotes::install_cran("rcmdcheck")
-          # Due to Matrix/SeuratObject: https://github.com/mojaveazure/seurat-object/issues/166
-          install.packages('SeuratObject', ask = FALSE, force = TRUE, type = 'source', repos = 'https://cloud.r-project.org')
         shell: Rscript {0}
 
       - name: Session info
@@ -117,7 +115,7 @@ jobs:
         if: failure()
         uses: actions/upload-artifact@main
         with:
-          name: ${{ runner.os }}-r${{ matrix.config.r }}-results
+          name: ${{ runner.os }}-r${{ matrix.config.r }}-bioc${{ matrix.config.bioc }}-results
           path: check
 
       - name: Install package

diff --git a/Dockerfile b/Dockerfile
@@ -22,7 +22,5 @@ RUN cd /RIRA \
 	&& R CMD build . \
 	&& Rscript -e "BiocManager::install(ask = F, upgrade = 'always');" \
 	&& Rscript -e "devtools::install_deps(pkg = '.', dependencies = TRUE, upgrade = 'always');" \
-    # Due to Matrix/SeuratObject: https://github.com/mojaveazure/seurat-object/issues/166
-    && Rscript -e "install.packages('SeuratObject', ask = FALSE, force = TRUE, type = 'source', repos = 'https://cloud.r-project.org')" \
 	&& R CMD INSTALL --build *.tar.gz \
 	&& rm -Rf /tmp/downloaded_packages/ /tmp/*.rds