Update package in Remotes

BimberLab · Feb 22, 2025 · 08e2124 · 08e2124
1 parent 92e55a4
commit 08e2124
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Showing 2 changed files with 2 additions and 2 deletions.
diff --git a/DESCRIPTION b/DESCRIPTION
@@ -54,8 +54,7 @@ Suggests:
     RCurl
 Remotes:
     pengminshi/cFIT,
-    satijalab/seurat-data,
-    mojaveazure/seurat-disk,
+    SeuratData=satijalab/seurat-data,
     carmonalab/UCell,
     carmonalab/scGate
 RoxygenNote: 7.3.2

diff --git a/R/scGate.R b/R/scGate.R
@@ -39,6 +39,7 @@ RunScGate <- function(seuratObj, model, min.cells = 30, assay = 'RNA', pos.thr =
                         neg.thr = neg.thr,
                         seed = GetSeed(),
                         ncores = ncores,
+                        keep.ranks = TRUE,
                         output.col.name = output.col.name,
                         genes.blacklist = genes.blacklist
   ))