STYLE: Update Slicer website links to https versions

BRAINSia · Apr 6, 2022 · f4f2697 · f4f2697
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Showing 48 changed files with 106 additions and 106 deletions.
diff --git a/Applications/SlicerApp/Testing/Python/AtlasTests.py b/Applications/SlicerApp/Testing/Python/AtlasTests.py
@@ -26,9 +26,9 @@ def __init__(self, parent):
 
     For more information:
 
-    Abdominal Atlas: <a>http://www.slicer.org/publications/item/view/1918</a>
-    Brain Atlas: <a>http://www.slicer.org/publications/item/view/2037</a>
-    Knee Atlas: <a>http://www.slicer.org/publications/item/view/1953</a>
+    Abdominal Atlas: <a>https://www.slicer.org/publications/item/view/1918</a>
+    Brain Atlas: <a>https://www.slicer.org/publications/item/view/2037</a>
+    Knee Atlas: <a>https://www.slicer.org/publications/item/view/1953</a>
 
     """
     parent.acknowledgementText = """

diff --git a/Applications/SlicerApp/Testing/Python/CMakeLists.txt b/Applications/SlicerApp/Testing/Python/CMakeLists.txt
@@ -390,7 +390,7 @@ add_test(
 
 #
 # SelfTests
-# see http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Developers/Tutorials/SelfTestModule
+# see https://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Developers/Tutorials/SelfTestModule
 #
 
 if(Slicer_USE_QtTesting AND Slicer_USE_PYTHONQT)

diff --git a/Applications/SlicerApp/Testing/Python/WebEngine.py b/Applications/SlicerApp/Testing/Python/WebEngine.py
@@ -63,7 +63,7 @@ def setup(self):
         "label": "Crowds Cure Cancer", "url": "http://cancer.crowds-cure.org"
       },
       {
-        "label": "Slicer Home Page", "url": "http://slicer.org"
+        "label": "Slicer Home Page", "url": "https://slicer.org"
       },
       {
         "label": "MorphoSource", "url": "https://www.morphosource.org"

diff --git a/Base/Logic/Resources/ColorFiles/DarkBrightChartColors.txt b/Base/Logic/Resources/ColorFiles/DarkBrightChartColors.txt
@@ -4,7 +4,7 @@
 #Filename: Slicer4_2012_DarkBrightChartColors.txt
 #Title: Slicer4:2012 DarkBrightChartColors
 #PageName: Slicer4:2012_DarkBrightChartColors
-#Source: http://www.slicer.org/slicerWiki/index.php/Slicer4:2012_DarkBrightChartColors
+#Source: https://www.slicer.org/slicerWiki/index.php/Slicer4:2012_DarkBrightChartColors
 #
 #Begin table data:
 0 Series_1 236 44 51 255

diff --git a/Base/Logic/Resources/ColorFiles/GenericAnatomyColors.txt b/Base/Logic/Resources/ColorFiles/GenericAnatomyColors.txt
@@ -4,7 +4,7 @@
 #Filename: Slicer3_2010_GenericAnatomyColors.txt
 #Title: Slicer3:2010 GenericAnatomyColors
 #PageName: Slicer3:2010_GenericAnatomyColors
-#Source: http://www.slicer.org/slicerWiki/index.php/Slicer3:2010_GenericAnatomyColors#Lookup_table
+#Source: https://www.slicer.org/slicerWiki/index.php/Slicer3:2010_GenericAnatomyColors#Lookup_table
 #
 #Begin table data:
 0 background 0 0 0 0

diff --git a/Base/Logic/Resources/ColorFiles/LightPaleChartColors.txt b/Base/Logic/Resources/ColorFiles/LightPaleChartColors.txt
@@ -4,7 +4,7 @@
 #Filename: Slicer4_2012_LightPaleChartColors.txt
 #Title: Slicer4:2012 LightPaleChartColors
 #PageName: Slicer4:2012_LightPaleChartColors
-#Source: http://www.slicer.org/slicerWiki/index.php/Slicer4:2012_LightPaleChartColors
+#Source: https://www.slicer.org/slicerWiki/index.php/Slicer4:2012_LightPaleChartColors
 #
 #Begin table data:
 0 Series_1 241 175 174 255

diff --git a/Base/Logic/Resources/ColorFiles/MediumChartColors.txt b/Base/Logic/Resources/ColorFiles/MediumChartColors.txt
@@ -4,7 +4,7 @@
 #Filename: Slicer4_2012_MediumChartColors.txt
 #Title: Slicer4:2012 MediumChartColors
 #PageName: Slicer4:2012_MediumChartColors
-#Source: http://www.slicer.org/slicerWiki/index.php/Slicer4:2012_MediumChartColors
+#Source: https://www.slicer.org/slicerWiki/index.php/Slicer4:2012_MediumChartColors
 #
 #Begin table data:
 0 Series_1 239 89 98 255

diff --git a/Base/Logic/Resources/ColorFiles/Slicer3_2010_Brain_Labels.txt b/Base/Logic/Resources/ColorFiles/Slicer3_2010_Brain_Labels.txt
@@ -4,7 +4,7 @@
 #Filename: Slicer3_2010_Brain_Labels.txt
 #Title: Slicer3:2010 Brain Labels
 #PageName: Slicer3:2010_Brain_Labels
-#Source: http://www.slicer.org/slicerWiki/index.php/Slicer3:2010_Brain_Labels
+#Source: https://www.slicer.org/slicerWiki/index.php/Slicer3:2010_Brain_Labels
 #
 #Begin table data:
 0 Background 0 0 0 0

diff --git a/Base/Logic/Resources/ColorFiles/Slicer3_2010_Label_Colors.txt b/Base/Logic/Resources/ColorFiles/Slicer3_2010_Label_Colors.txt
@@ -4,7 +4,7 @@
 #Filename: Slicer3_2010_Label_Colors.txt
 #Title: Slicer3:2010 Label Colors
 #PageName: Slicer3:2010_Label_Colors
-#Source: http://www.slicer.org/slicerWiki/index.php/Slicer3:2010_Label_Colors
+#Source: https://www.slicer.org/slicerWiki/index.php/Slicer3:2010_Label_Colors
 #
 #Begin table data:
 0 Background 0 0 0 0

diff --git a/Base/Python/slicer/ScriptedLoadableModule.py b/Base/Python/slicer/ScriptedLoadableModule.py
@@ -28,8 +28,8 @@ def __init__(self, parent):
 """
 
     parent.acknowledgementText = """
-This work is supported by NA-MIC, NAC, BIRN, NCIGT, and the Slicer Community. See <a>http://www.slicer.org</a> for details.
-This work is partially supported by PAR-07-249: R01CA131718 NA-MIC Virtual Colonoscopy (See <a href=http://www.slicer.org>http://www.na-mic.org/Wiki/index.php/NA-MIC_NCBC_Collaboration:NA-MIC_virtual_colonoscopy</a>).
+This work is supported by NA-MIC, NAC, BIRN, NCIGT, and the Slicer Community. See <a>https://www.slicer.org</a> for details.
+This work is partially supported by PAR-07-249: R01CA131718 NA-MIC Virtual Colonoscopy (See <a href=https://www.slicer.org>http://www.na-mic.org/Wiki/index.php/NA-MIC_NCBC_Collaboration:NA-MIC_virtual_colonoscopy</a>).
 """
 
     # Set module icon from Resources/Icons/<ModuleName>.png

diff --git a/Base/QTApp/qSlicerAboutDialog.cxx b/Base/QTApp/qSlicerAboutDialog.cxx
@@ -55,7 +55,7 @@ qSlicerAboutDialog::qSlicerAboutDialog(QWidget* parentWidget)
       + " / " + slicer->repositoryRevision());
     d->CreditsTextBrowser->append("");
     d->CreditsTextBrowser->append("");
-    d->CreditsTextBrowser->insertHtml("<a href=\"http://download.slicer.org/\">Download</a> a newer version<br />");
+    d->CreditsTextBrowser->insertHtml("<a href=\"https://download.slicer.org/\">Download</a> a newer version<br />");
     d->CreditsTextBrowser->append("");
     }
   else

diff --git a/Base/QTCore/Testing/Cxx/qSlicerUtilsTest1.cxx b/Base/QTCore/Testing/Cxx/qSlicerUtilsTest1.cxx
@@ -763,30 +763,30 @@ int isLoadableModuleTest()
     {
     //! [replaceWikiUrlVersion example1]
     CHECK_QSTRING(
-      qSlicerUtils::replaceWikiUrlVersion("http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/SlicerToKiwiExporter", "4.4"),
-      "http://wiki.slicer.org/slicerWiki/index.php/Documentation/4.4/Extensions/SlicerToKiwiExporter");
+      qSlicerUtils::replaceWikiUrlVersion("https://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/SlicerToKiwiExporter", "4.4"),
+      "https://wiki.slicer.org/slicerWiki/index.php/Documentation/4.4/Extensions/SlicerToKiwiExporter");
     //! [replaceWikiUrlVersion example1]
 
     //! [replaceWikiUrlVersion example2]
     CHECK_QSTRING(
-      qSlicerUtils::replaceWikiUrlVersion("http://wiki.slicer.org/slicerWiki/index.php/Documentation/Foo/Extensions/SlicerToKiwiExporter", "Bar"),
-      "http://wiki.slicer.org/slicerWiki/index.php/Documentation/Bar/Extensions/SlicerToKiwiExporter");
+      qSlicerUtils::replaceWikiUrlVersion("https://wiki.slicer.org/slicerWiki/index.php/Documentation/Foo/Extensions/SlicerToKiwiExporter", "Bar"),
+      "https://wiki.slicer.org/slicerWiki/index.php/Documentation/Bar/Extensions/SlicerToKiwiExporter");
     //! [replaceWikiUrlVersion example2]
 
     //! [replaceWikiUrlVersion example3]
     CHECK_QSTRING(
-      qSlicerUtils::replaceWikiUrlVersion("http://wiki.slicer.org/slicerWiki/index.php/Documentation/Foo/Extensions/SlicerToKiwiExporter/Foo", "Bar"),
-      "http://wiki.slicer.org/slicerWiki/index.php/Documentation/Bar/Extensions/SlicerToKiwiExporter/Foo");
+      qSlicerUtils::replaceWikiUrlVersion("https://wiki.slicer.org/slicerWiki/index.php/Documentation/Foo/Extensions/SlicerToKiwiExporter/Foo", "Bar"),
+      "https://wiki.slicer.org/slicerWiki/index.php/Documentation/Bar/Extensions/SlicerToKiwiExporter/Foo");
     //! [replaceWikiUrlVersion example3]
 
     //! [replaceWikiUrlVersion example4]
     QString input =
       "Read documentation at "
-      "http://wiki.slicer.org/slicerWiki/index.php/Documentation/4.4/Extensions/SlicerToKiwiExporter."
+      "https://wiki.slicer.org/slicerWiki/index.php/Documentation/4.4/Extensions/SlicerToKiwiExporter."
       "You will learn how to ...";
     QString expectedOutput =
       "Read documentation at "
-      "http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/SlicerToKiwiExporter."
+      "https://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/SlicerToKiwiExporter."
       "You will learn how to ...";
     CHECK_QSTRING(qSlicerUtils::replaceWikiUrlVersion(input, "Nightly"), expectedOutput);
     //! [replaceWikiUrlVersion example4]

diff --git a/Base/QTCore/qSlicerAbstractCoreModule.h b/Base/QTCore/qSlicerAbstractCoreModule.h
@@ -204,7 +204,7 @@ class Q_SLICER_BASE_QTCORE_EXPORT qSlicerAbstractCoreModule : public QObject
   virtual void printAdditionalInfo();
 
   /// Convenience method to return slicer wiki URL
-  QString slicerWikiUrl()const{ return "http://www.slicer.org/slicerWiki/index.php"; }
+  QString slicerWikiUrl()const{ return "https://www.slicer.org/slicerWiki/index.php"; }
 
   /// Convenience method that returns a string that can be inserted into the application help text that contains
   /// link to the module's documentation in current Slicer version's documentation on ReadTheDocs.

diff --git a/Base/QTGUI/qSlicerApplication.cxx b/Base/QTGUI/qSlicerApplication.cxx
@@ -142,8 +142,8 @@ class qSlicerApplicationPrivate : public qSlicerCoreApplicationPrivate
 
   QPointer<qSlicerLayoutManager> LayoutManager;
   ctkToolTipTrapper* ToolTipTrapper;
-  // If MainWindow exists and the dialog is displayed then the MainWindow 
-  // must be set as parent to ensure correct Z order; 
+  // If MainWindow exists and the dialog is displayed then the MainWindow
+  // must be set as parent to ensure correct Z order;
   // but that also transfers the ownership of the object, therefore we use QPointer
   // to keep track if the object is deleted already by the MainWindow.
   QPointer<ctkSettingsDialog> SettingsDialog;
@@ -182,7 +182,7 @@ qSlicerApplicationPrivate::qSlicerApplicationPrivate(
 qSlicerApplicationPrivate::~qSlicerApplicationPrivate()
 {
   // Delete settings dialog. deleteLater would cause memory leaks on exit.
-  // Settings dialog is displayed then MainWindow becomes its parent and 
+  // Settings dialog is displayed then MainWindow becomes its parent and
   // thus MainWindow is responsible for deleting it.
   // Set the parent to 'nullptr' removes this responsibility.
   if (this->SettingsDialog)
@@ -448,7 +448,7 @@ bool qSlicerApplication::notify(QObject *receiver, QEvent *event)
       errorMessage += tr("Adding more RAM may fix this issue.\n\n");
       }
     errorMessage += tr("If you have a repeatable sequence of steps that causes this message, ");
-    errorMessage += tr("please report the issue following instructions available at http://slicer.org\n\n\n");
+    errorMessage += tr("please report the issue following instructions available at https://slicer.org\n\n\n");
     errorMessage += tr("The message detail is:\n\n");
     errorMessage += tr("Exception thrown in event: ") + exception.what();
     qCritical() << errorMessage;
@@ -467,7 +467,7 @@ bool qSlicerApplication::notify(QObject *receiver, QEvent *event)
     errorMessage = tr("%1 has caught an application error, ").arg(this->applicationName());
     errorMessage += tr("please save your work and restart.\n\n");
     errorMessage += tr("If you have a repeatable sequence of steps that causes this message, ");
-    errorMessage += tr("please report the issue following instructions available at http://slicer.org\n\n\n");
+    errorMessage += tr("please report the issue following instructions available at https://slicer.org\n\n\n");
     errorMessage += tr("The message detail is:\n\n");
     errorMessage += tr("Exception thrown in event: ") + exception.what();
     qCritical() << errorMessage;

diff --git a/CMake/SlicerCTestUploadURL.cmake b/CMake/SlicerCTestUploadURL.cmake
@@ -41,7 +41,7 @@
 #     Supported hash algorithms depends on the version of CMake.
 #     See https://cmake.org/cmake/help/latest/command/string.html#supported-hash-algorithms
 #
-#   FILEPATH 
+#   FILEPATH
 #     File for computing the cryptographic hash and substituting ``%(hash)`` in
 #     specified URL template.
 #

diff --git a/CMake/pre-commit b/CMake/pre-commit
@@ -5,6 +5,6 @@ Paste the following commands into a shell:
   ./Utilities/SetupForDevelopment.sh
 
 See
-http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Developers/DevelopmentWithGit
+https://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Developers/DevelopmentWithGit
  for more information.'
 exit 1
diff --git a/CMakeLists.txt b/CMakeLists.txt
@@ -62,7 +62,7 @@ set(Slicer_CMAKE_DIR ${Slicer_SOURCE_DIR}/CMake)
 set(Slicer_EXTENSIONS_CMAKE_DIR ${Slicer_SOURCE_DIR}/Extensions/CMake)
 
 #-----------------------------------------------------------------------------
-# http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Developers/DevelopmentWithGit
+# https://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Developers/DevelopmentWithGit
 #-----------------------------------------------------------------------------
 include(SlicerCheckSourceTree)
 

diff --git a/COPYRIGHT.txt b/COPYRIGHT.txt
@@ -1,6 +1,6 @@
 
 For more information, please see:
-  http://www.slicer.org
+  https://www.slicer.org
 and
   http://wiki.na-mic.org/Wiki/index.php/Slicer3
 

diff --git a/Docs/developer_guide/api.md b/Docs/developer_guide/api.md
@@ -7,7 +7,7 @@ Check out these [developer tutorials](https://www.slicer.org/wiki/Documentation/
 ## C++
 
 Majority of Slicer core modules and all basic infrastructure are implemented in C++.
-Documentation of these classes are available at: http://apidocs.slicer.org/master
+Documentation of these classes are available at: https://apidocs.slicer.org/master
 
 ## Python
 
@@ -30,11 +30,11 @@ vtkITK
 ### Doxygen-style documentation
 
 Slicer core infrastructure is mostly implemented in C++ and it is made available in Python in the `slicer` namespace.
-Documentation of these classes is available at: http://apidocs.slicer.org/master/
+Documentation of these classes is available at: https://apidocs.slicer.org/master/
 
 C++ classes are made available in Python using two mechanisms: PythonQt and VTK Python wrapper. They have a few slight differences:
-- Qt classes (class name starts with `q` or `Q`): for example, [qSlicerMarkupsPlaceWidget](http://apidocs.slicer.org/master/classqSlicerMarkupsPlaceWidget.html). These classes are all derived from QObject and follow [Qt](https://www.qt.io/) conventions. They support properties, signals, and slots.
-- VTK classes (class name starts with `vtk`): for example, [vtkMRMLModelDisplayNode](http://apidocs.slicer.org/master/classvtkMRMLModelDisplayNode.html). These classes are all derived from vtkObject and follow [VTK](https://vtk.org/) conventions.
+- Qt classes (class name starts with `q` or `Q`): for example, [qSlicerMarkupsPlaceWidget](https://apidocs.slicer.org/master/classqSlicerMarkupsPlaceWidget.html). These classes are all derived from QObject and follow [Qt](https://www.qt.io/) conventions. They support properties, signals, and slots.
+- VTK classes (class name starts with `vtk`): for example, [vtkMRMLModelDisplayNode](https://apidocs.slicer.org/master/classvtkMRMLModelDisplayNode.html). These classes are all derived from vtkObject and follow [VTK](https://vtk.org/) conventions.
 
 This documentation is generated using the Doxygen tool, which uses C++ syntax. The following rules can help in interpreting this documentation for Python:
 

diff --git a/Docs/developer_guide/extensions.md b/Docs/developer_guide/extensions.md
@@ -169,7 +169,7 @@ Extension documentation examples:
 - [SegmentMesher](https://github.com/lassoan/SlicerSegmentMesher)
 - [SequenceRegistration](https://github.com/moselhy/SlicerSequenceRegistration)
 - [AI-assisted annotation client](https://github.com/NVIDIA/ai-assisted-annotation-client/tree/master/slicer-plugin)
-- [SlicerDMRI](http://dmri.slicer.org/) - large extension documented using Github pages
+- [SlicerDMRI](https://dmri.slicer.org/) - large extension documented using Github pages
 
 Thumbnails to YouTube videos can be generated by downloading the image from [here](https://img.youtube.com/vi/your-youtube-video-id/0.jpg) and adding a playback button using [this free service](http://addplaybuttontoimage.way4info.net/) (the second red arrow is recommended).
 
@@ -564,7 +564,7 @@ if(NOT Slicer_SOURCE_DIR)
   set(EXTENSION_CONTRIBUTORS "Jean-Christophe Fillion-Robin (Kitware)")
   set(EXTENSION_DESCRIPTION "This is an example of extension bundling N module(s)")
   set(EXTENSION_ICONURL "http://viewvc.slicer.org/viewvc.cgi/Slicer4/trunk/Extensions/Testing/EmptyExtensionTemplate/EmptyExtensionTemplate.png?revision=21746&view=co")
-  set(EXTENSION_SCREENSHOTURLS "http://www.slicer.org/w/img_auth.php/4/42/Slicer-r19441-EmptyExtensionTemplate-screenshot.png")
+  set(EXTENSION_SCREENSHOTURLS "https://www.slicer.org/w/img_auth.php/4/42/Slicer-r19441-EmptyExtensionTemplate-screenshot.png")
 endif()
 
 if(NOT Slicer_SOURCE_DIR)
@@ -592,7 +592,7 @@ set(EXTENSION_HOMEPAGE "https://www.slicer.org/wiki/Documentation/Nightly/Extens
 set(EXTENSION_CONTRIBUTORS "Jean-Christophe Fillion-Robin (Kitware)")
 set(EXTENSION_DESCRIPTION "This is an example of empty extension")
 set(EXTENSION_ICONURL "http://viewvc.slicer.org/viewvc.cgi/Slicer4/trunk/Extensions/Testing/EmptyExtensionTemplate/EmptyExtensionTemplate.png?revision=21746&view=co")
-set(EXTENSION_SCREENSHOTURLS "http://www.slicer.org/w/img_auth.php/4/42/Slicer-r19441-EmptyExtensionTemplate-screenshot.png")
+set(EXTENSION_SCREENSHOTURLS "https://www.slicer.org/w/img_auth.php/4/42/Slicer-r19441-EmptyExtensionTemplate-screenshot.png")
 
 find_package(Slicer REQUIRED)
 include(${Slicer_USE_FILE})

diff --git a/Docs/developer_guide/modules/colors.md b/Docs/developer_guide/modules/colors.md
@@ -2,7 +2,7 @@
 
 ## Color table file format (.txt, .ctbl)
 
-The color file format can store a [color node](http://apidocs.slicer.org/master/classvtkMRMLColorNode.html) in a plain text file with the `.txt` or `.ctbl` extension. It is a text file with values separated by space, with a custom header to specify lookup table type. Header lines are prefixed with `#`.
+The color file format can store a [color node](https://apidocs.slicer.org/master/classvtkMRMLColorNode.html) in a plain text file with the `.txt` or `.ctbl` extension. It is a text file with values separated by space, with a custom header to specify lookup table type. Header lines are prefixed with `#`.
 
 ### Discrete scale color lookup table