COMP: Update python packages to latest

BRAINSia · Jul 22, 2022 · b0a6457 · b0a6457
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commit b0a6457
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diff --git a/SuperBuild/External_python-dicom-requirements.cmake b/SuperBuild/External_python-dicom-requirements.cmake
@@ -48,24 +48,28 @@ if(NOT Slicer_USE_SYSTEM_${proj})
   # [/six]
   # [Pillow]
   # Hashes correspond to the following packages:
-  #  - Pillow-9.0.1-1-cp39-cp39-macosx_11_0_arm64.whl
-  #  - Pillow-9.0.1-cp39-cp39-macosx_10_10_x86_64.whl
-  #  - Pillow-9.0.1-cp39-cp39-macosx_11_0_arm64.whl
-  #  - Pillow-9.0.1-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl
-  #  - Pillow-9.0.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
-  #  - Pillow-9.0.1-cp39-cp39-win_amd64.whl
-  Pillow==9.0.1 --hash=sha256:b9618823bd237c0d2575283f2939655f54d51b4527ec3972907a927acbcc5bfc \
-                --hash=sha256:80ca33961ced9c63358056bd08403ff866512038883e74f3a4bf88ad3eb66838 \
-                --hash=sha256:1c3c33ac69cf059bbb9d1a71eeaba76781b450bc307e2291f8a4764d779a6b28 \
-                --hash=sha256:12875d118f21cf35604176872447cdb57b07126750a33748bac15e77f90f1f9c \
-                --hash=sha256:d3c5c79ab7dfce6d88f1ba639b77e77a17ea33a01b07b99840d6ed08031cb2a7 \
-                --hash=sha256:f25ed6e28ddf50de7e7ea99d7a976d6a9c415f03adcaac9c41ff6ff41b6d86ac
+  #  - Pillow-9.2.0-cp39-cp39-macosx_10_10_x86_64.whl
+  #  - Pillow-9.2.0-cp39-cp39-macosx_11_0_arm64.whl
+  #  - Pillow-9.2.0-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl
+  #  - Pillow-9.2.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
+  #  - Pillow-9.2.0-cp39-cp39-manylinux_2_28_aarch64.whl
+  #  - Pillow-9.2.0-cp39-cp39-manylinux_2_28_x86_64.whl
+  #  - Pillow-9.2.0-cp39-cp39-musllinux_1_1_x86_64.whl
+  #  - Pillow-9.2.0-cp39-cp39-win_amd64.whl
+  Pillow==9.2.0 --hash=sha256:0ed2c4ef2451de908c90436d6e8092e13a43992f1860275b4d8082667fbb2ffc \
+                --hash=sha256:4ad2f835e0ad81d1689f1b7e3fbac7b01bb8777d5a985c8962bedee0cc6d43da \
+                --hash=sha256:ea98f633d45f7e815db648fd7ff0f19e328302ac36427343e4432c84432e7ff4 \
+                --hash=sha256:9a54614049a18a2d6fe156e68e188da02a046a4a93cf24f373bffd977e943421 \
+                --hash=sha256:5aed7dde98403cd91d86a1115c78d8145c83078e864c1de1064f52e6feb61b20 \
+                --hash=sha256:13b725463f32df1bfeacbf3dd197fb358ae8ebcd8c5548faa75126ea425ccb60 \
+                --hash=sha256:808add66ea764ed97d44dda1ac4f2cfec4c1867d9efb16a33d158be79f32b8a4 \
+                --hash=sha256:fac2d65901fb0fdf20363fbd345c01958a742f2dc62a8dd4495af66e3ff502a4
   # [/Pillow]
   # [retrying]
   retrying==1.3.3 --hash=sha256:08c039560a6da2fe4f2c426d0766e284d3b736e355f8dd24b37367b0bb41973b
   # [/retrying]
   # [dicomweb-client]
-  dicomweb-client==0.54.4 --hash=sha256:397cb05982258fde33bd059efecd74893350826f9fe71f36a9500e98baf6f96d
+  dicomweb-client==0.56.2 --hash=sha256:7cb314f5dc899613ddacbc8481256416793ccf3ff503d0105c508e2116a1639c
   # [/dicomweb-client]
   ]===])
 

diff --git a/SuperBuild/External_python-extension-manager-requirements.cmake b/SuperBuild/External_python-extension-manager-requirements.cmake
@@ -34,7 +34,7 @@ if(NOT Slicer_USE_SYSTEM_${proj})
   set(requirements_file ${CMAKE_BINARY_DIR}/${proj}-requirements.txt)
   file(WRITE ${requirements_file} [===[
   # [chardet]
-  chardet==4.0.0 --hash=sha256:f864054d66fd9118f2e67044ac8981a54775ec5b67aed0441892edb553d21da5
+  chardet==5.0.0 --hash=sha256:d3e64f022d254183001eccc5db4040520c0f23b1a3f33d6413e099eb7f126557
   # [/chardet]
   # [CouchDB]
   couchdb==1.2 --hash=sha256:13a28a1159c49f8346732e8724b9a4d65cba54bec017c4a7eeb1499fe88151d1

diff --git a/SuperBuild/External_python-extension-manager-ssl-requirements.cmake b/SuperBuild/External_python-extension-manager-ssl-requirements.cmake
@@ -33,18 +33,24 @@ if(NOT Slicer_USE_SYSTEM_${proj})
   set(requirements_file ${CMAKE_BINARY_DIR}/${proj}-requirements.txt)
   file(WRITE ${requirements_file} [===[
   # [PyJWT]
-  PyJWT==2.3.0 --hash=sha256:e0c4bb8d9f0af0c7f5b1ec4c5036309617d03d56932877f2f7a0beeb5318322f
+  PyJWT==2.4.0 --hash=sha256:72d1d253f32dbd4f5c88eaf1fdc62f3a19f676ccbadb9dbc5d07e951b2b26daf
   # [/PyJWT]
   # [wrapt]
   # Hashes correspond to the following packages:
-  #  - wrapt-1.13.3-cp39-cp39-macosx_10_9_x86_64.whl
-  #  - wrapt-1.13.3-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl
-  #  - wrapt-1.13.3-cp39-cp39-musllinux_1_1_x86_64.whl
-  #  - wrapt-1.13.3-cp39-cp39-win_amd64.whl
-  wrapt==1.13.3 --hash=sha256:981da26722bebb9247a0601e2922cedf8bb7a600e89c852d063313102de6f2cb \
-                --hash=sha256:25b1b1d5df495d82be1c9d2fad408f7ce5ca8a38085e2da41bb63c914baadff7 \
-                --hash=sha256:865c0b50003616f05858b22174c40ffc27a38e67359fa1495605f96125f76640 \
-                --hash=sha256:81bd7c90d28a4b2e1df135bfbd7c23aee3050078ca6441bead44c42483f9ebfb
+  #  - wrapt-1.14.1-cp39-cp39-macosx_10_9_x86_64.whl
+  #  - wrapt-1.14.1-cp39-cp39-macosx_11_0_arm64.whl
+  #  - wrapt-1.14.1-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl
+  #  - wrapt-1.14.1-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl
+  #  - wrapt-1.14.1-cp39-cp39-musllinux_1_1_aarch64.whl
+  #  - wrapt-1.14.1-cp39-cp39-musllinux_1_1_x86_64.whl
+  #  - wrapt-1.14.1-cp39-cp39-win_amd64.whl
+  wrapt==1.14.1 --hash=sha256:3232822c7d98d23895ccc443bbdf57c7412c5a65996c30442ebe6ed3df335383 \
+                --hash=sha256:988635d122aaf2bdcef9e795435662bcd65b02f4f4c1ae37fbee7401c440b3a7 \
+                --hash=sha256:9cca3c2cdadb362116235fdbd411735de4328c61425b0aa9f872fd76d02c4e86 \
+                --hash=sha256:40e7bc81c9e2b2734ea4bc1aceb8a8f0ceaac7c5299bc5d69e37c44d9081d43b \
+                --hash=sha256:b9b7a708dd92306328117d8c4b62e2194d00c365f18eff11a9b53c6f923b01e3 \
+                --hash=sha256:34aa51c45f28ba7f12accd624225e2b1e5a3a45206aa191f6f9aac931d9d56fe \
+                --hash=sha256:dee60e1de1898bde3b238f18340eec6148986da0455d8ba7848d50470a7a32fb
   # [/wrapt]
   # [Deprecated]
   Deprecated==1.2.13 --hash=sha256:64756e3e14c8c5eea9795d93c524551432a0be75629f8f29e67ab8caf076c76d
@@ -54,16 +60,18 @@ if(NOT Slicer_USE_SYSTEM_${proj})
   # [/pycparser]
   # [cffi]
   # Hashes correspond to the following packages:
-  #  - cffi-1.15.0-cp39-cp39-macosx_10_9_x86_64.whl
-  #  - cffi-1.15.0-cp39-cp39-macosx_11_0_arm64.whl
-  #  - cffi-1.15.0-cp39-cp39-manylinux_2_12_x86_64.manylinux2010_x86_64.whl
-  #  - cffi-1.15.0-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl
-  #  - cffi-1.15.0-cp39-cp39-win_amd64.whl
-  cffi==1.15.0 --hash=sha256:45e8636704eacc432a206ac7345a5d3d2c62d95a507ec70d62f23cd91770482a \
-               --hash=sha256:31fb708d9d7c3f49a60f04cf5b119aeefe5644daba1cd2a0fe389b674fd1de37 \
-               --hash=sha256:74fdfdbfdc48d3f47148976f49fab3251e550a8720bebc99bf1483f5bfb5db3e \
-               --hash=sha256:ffaa5c925128e29efbde7301d8ecaf35c8c60ffbcd6a1ffd3a552177c8e5e796 \
-               --hash=sha256:3773c4d81e6e818df2efbc7dd77325ca0dcb688116050fb2b3011218eda36139
+  #  - cffi-1.15.1-cp39-cp39-macosx_10_9_x86_64.whl
+  #  - cffi-1.15.1-cp39-cp39-macosx_11_0_arm64.whl
+  #  - cffi-1.15.1-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl
+  #  - cffi-1.15.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
+  #  - cffi-1.15.1-cp39-cp39-musllinux_1_1_x86_64.whl
+  #  - cffi-1.15.1-cp39-cp39-win_amd64.whl
+  cffi==1.15.1 --hash=sha256:54a2db7b78338edd780e7ef7f9f6c442500fb0d41a5a4ea24fff1c929d5af585 \
+               --hash=sha256:fcd131dd944808b5bdb38e6f5b53013c5aa4f334c5cad0c72742f6eba4b73db0 \
+               --hash=sha256:6c9a799e985904922a4d207a94eae35c78ebae90e128f0c4e521ce339396be9d \
+               --hash=sha256:5d598b938678ebf3c67377cdd45e09d431369c3b1a5b331058c338e201f12b27 \
+               --hash=sha256:98d85c6a2bef81588d9227dde12db8a7f47f639f4a17c9ae08e773aa9c697bf3 \
+               --hash=sha256:70df4e3b545a17496c9b3f41f5115e69a4f2e77e94e1d2a8e1070bc0c38c8a3c
   # [/cffi]
   # [PyNaCl]
   # Hashes correspond to the following packages:

diff --git a/SuperBuild/External_python-numpy.cmake b/SuperBuild/External_python-numpy.cmake
@@ -34,16 +34,16 @@ if(NOT Slicer_USE_SYSTEM_${proj})
   # [/nose]
   # [numpy]
   # Hashes correspond to the following packages:
-  #  - numpy-1.22.1-cp39-cp39-macosx_10_9_x86_64.whl
-  #  - numpy-1.22.1-cp39-cp39-macosx_11_0_arm64.whl
-  #  - numpy-1.22.1-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl
-  #  - numpy-1.22.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
-  #  - numpy-1.22.1-cp39-cp39-win_amd64.whl
-  numpy==1.22.1 --hash=sha256:bcd19dab43b852b03868796f533b5f5561e6c0e3048415e675bec8d2e9d286c1 \
-                --hash=sha256:78bfbdf809fc236490e7e65715bbd98377b122f329457fffde206299e163e7f3 \
-                --hash=sha256:c51124df17f012c3b757380782ae46eee85213a3215e51477e559739f57d9bf6 \
-                --hash=sha256:88d54b7b516f0ca38a69590557814de2dd638d7d4ed04864826acaac5ebb8f01 \
-                --hash=sha256:4ac4d7c9f8ea2a79d721ebfcce81705fc3cd61a10b731354f1049eb8c99521e8
+  #  - numpy-1.23.1-cp39-cp39-macosx_10_9_x86_64.whl
+  #  - numpy-1.23.1-cp39-cp39-macosx_11_0_arm64.whl
+  #  - numpy-1.23.1-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl
+  #  - numpy-1.23.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
+  #  - numpy-1.23.1-cp39-cp39-win_amd64.whl
+  numpy==1.23.1 --hash=sha256:173f28921b15d341afadf6c3898a34f20a0569e4ad5435297ba262ee8941e77b \
+                --hash=sha256:876f60de09734fbcb4e27a97c9a286b51284df1326b1ac5f1bf0ad3678236b22 \
+                --hash=sha256:35590b9c33c0f1c9732b3231bb6a72d1e4f77872390c47d50a615686ae7ed3fd \
+                --hash=sha256:a35c4e64dfca659fe4d0f1421fc0f05b8ed1ca8c46fb73d9e5a7f175f85696bb \
+                --hash=sha256:37ece2bd095e9781a7156852e43d18044fd0d742934833335599c583618181b9
   # [/numpy]
   ]===])
 

diff --git a/SuperBuild/External_python-pip.cmake b/SuperBuild/External_python-pip.cmake
@@ -27,7 +27,7 @@ if(NOT Slicer_USE_SYSTEM_${proj})
   set(requirements_file ${CMAKE_BINARY_DIR}/${proj}-requirements.txt)
   file(WRITE ${requirements_file} [===[
   # [pip]
-  pip==22.0.3 --hash=sha256:c146f331f0805c77017c6bb9740cec4a49a0d4582d0c3cc8244b057f83eca359
+  pip==22.2 --hash=sha256:9abf423d5d64f3289ab9d5bf31da9e6234f2e9c5d8dcf1423bcb46b809a02c2c
   # [/pip]
   ]===])
 

diff --git a/SuperBuild/External_python-pythonqt-requirements.cmake b/SuperBuild/External_python-pythonqt-requirements.cmake
@@ -35,7 +35,7 @@ if(NOT Slicer_USE_SYSTEM_${proj})
   packaging==21.3 --hash=sha256:ef103e05f519cdc783ae24ea4e2e0f508a9c99b2d4969652eed6a2e1ea5bd522
   # [/packaging]
   # [pyparsing]
-  pyparsing==3.0.7 --hash=sha256:a6c06a88f252e6c322f65faf8f418b16213b51bdfaece0524c1c1bc30c63c484
+  pyparsing==3.0.9 --hash=sha256:5026bae9a10eeaefb61dab2f09052b9f4307d44aee4eda64b309723d8d206bbc
   # [/pyparsing]
   # [six]
   six==1.16.0 --hash=sha256:8abb2f1d86890a2dfb989f9a77cfcfd3e47c2a354b01111771326f8aa26e0254

diff --git a/SuperBuild/External_python-requests-requirements.cmake b/SuperBuild/External_python-requests-requirements.cmake
@@ -27,19 +27,19 @@ if(NOT Slicer_USE_SYSTEM_${proj})
   set(requirements_file ${CMAKE_BINARY_DIR}/${proj}-requirements.txt)
   file(WRITE ${requirements_file} [===[
   # [certifi]
-  certifi==2021.10.8 --hash=sha256:d62a0163eb4c2344ac042ab2bdf75399a71a2d8c7d47eac2e2ee91b9d6339569
+  certifi==2022.6.15 --hash=sha256:fe86415d55e84719d75f8b69414f6438ac3547d2078ab91b67e779ef69378412
   # [/certifi]
   # [idna]
   idna==3.3 --hash=sha256:84d9dd047ffa80596e0f246e2eab0b391788b0503584e8945f2368256d2735ff
   # [/idna]
   # [charset-normalizer]
-  charset-normalizer==2.0.12 --hash=sha256:6881edbebdb17b39b4eaaa821b438bf6eddffb4468cf344f09f89def34a8b1df
+  charset-normalizer==2.1.0 --hash=sha256:5189b6f22b01957427f35b6a08d9a0bc45b46d3788ef5a92e978433c7a35f8a5
   # [/charset-normalizer]
   # [urllib3]
-  urllib3==1.26.8 --hash=sha256:000ca7f471a233c2251c6c7023ee85305721bfdf18621ebff4fd17a8653427ed
+  urllib3==1.26.10 --hash=sha256:8298d6d56d39be0e3bc13c1c97d133f9b45d797169a0e11cdd0e0489d786f7ec
   # [/urllib3]
   # [requests]
-  requests==2.27.1 --hash=sha256:f22fa1e554c9ddfd16e6e41ac79759e17be9e492b3587efa038054674760e72d
+  requests==2.28.1 --hash=sha256:8fefa2a1a1365bf5520aac41836fbee479da67864514bdb821f31ce07ce65349
   # [/requests]
   ]===])
 

diff --git a/SuperBuild/External_python-scipy.cmake b/SuperBuild/External_python-scipy.cmake
@@ -31,18 +31,18 @@ if(NOT Slicer_USE_SYSTEM_${proj})
   file(WRITE ${requirements_file} [===[
   # [scipy]
   # Hashes correspond to the following packages:
-  #  - scipy-1.8.0-cp39-cp39-macosx_10_9_x86_64.whl
-  #  - scipy-1.8.0-cp39-cp39-macosx_12_0_arm64.whl
-  #  - scipy-1.8.0-cp39-cp39-macosx_12_0_universal2.macosx_10_9_x86_64.whl
-  #  - scipy-1.8.0-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl
-  #  - scipy-1.8.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
-  #  - scipy-1.8.0-cp39-cp39-win_amd64.whl
-  scipy==1.8.0 --hash=sha256:de2e80ee1d925984c2504812a310841c241791c5279352be4707cdcd7c255039 \
-               --hash=sha256:c2bae431d127bf0b1da81fc24e4bba0a84d058e3a96b9dd6475dfcb3c5e8761e \
-               --hash=sha256:723b9f878095ed994756fa4ee3060c450e2db0139c5ba248ee3f9628bd64e735 \
-               --hash=sha256:e6f0cd9c0bd374ef834ee1e0f0999678d49dcc400ea6209113d81528958f97c7 \
-               --hash=sha256:f3720d0124aced49f6f2198a6900304411dbbeed12f56951d7c66ebef05e3df6 \
-               --hash=sha256:bb7088e89cd751acf66195d2f00cf009a1ea113f3019664032d9075b1e727b6c
+  #  - scipy-1.8.1-cp39-cp39-macosx_10_9_x86_64.whl
+  #  - scipy-1.8.1-cp39-cp39-macosx_12_0_arm64.whl
+  #  - scipy-1.8.1-cp39-cp39-macosx_12_0_universal2.macosx_10_9_x86_64.whl
+  #  - scipy-1.8.1-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl
+  #  - scipy-1.8.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
+  #  - scipy-1.8.1-cp39-cp39-win_amd64.whl
+  scipy==1.8.1 --hash=sha256:f3e7a8867f307e3359cc0ed2c63b61a1e33a19080f92fe377bc7d49f646f2ec1 \
+               --hash=sha256:2ef0fbc8bcf102c1998c1f16f15befe7cffba90895d6e84861cd6c6a33fb54f6 \
+               --hash=sha256:83606129247e7610b58d0e1e93d2c5133959e9cf93555d3c27e536892f1ba1f2 \
+               --hash=sha256:d3b3c8924252caaffc54d4a99f1360aeec001e61267595561089f8b5900821bb \
+               --hash=sha256:70de2f11bf64ca9921fda018864c78af7147025e467ce9f4a11bc877266900a6 \
+               --hash=sha256:9dd4012ac599a1e7eb63c114d1eee1bcfc6dc75a29b589ff0ad0bb3d9412034f
   # [/scipy]
   ]===])
 

diff --git a/SuperBuild/External_python-setuptools.cmake b/SuperBuild/External_python-setuptools.cmake
@@ -26,7 +26,7 @@ if(NOT Slicer_USE_SYSTEM_${proj})
   set(requirements_file ${CMAKE_BINARY_DIR}/${proj}-requirements.txt)
   file(WRITE ${requirements_file} [===[
   # [setuptools]
-  setuptools==60.9.3 --hash=sha256:e4f30b9f84e5ab3decf945113119649fec09c1fc3507c6ebffec75646c56e62b
+  setuptools==63.2.0 --hash=sha256:0d33c374d41c7863419fc8f6c10bfe25b7b498aa34164d135c622e52580c6b16
   # [/setuptools]
   ]===])