Operetta Importer

Welcome to the Operetta Importer Wiki

This tool aims to simplify the export images from Operetta systems into something useable downstream.

Notable features

• Raw tiff files are loaded in parallel for each Field
• Specific Wells and Fields can be selected
• Specific channels, slices and frames can be selected
• XY data can be downsampled
• Z projection of data (Mean, Max, Sum, ...)
• Can use acquisition stage coordinates to fuse fields
• Can use Grid/Collection Stitching in order to align tiles and fuse fields

Getting started

Installation

This plugin is part of the PTBIOP update site. To make it available, please activate the PTBIOP update site in your Fiji installation.

Use (Interactive Tutorial)

Use (Scripting Tutorial)

How to's

Export multiple parts of a well that have contiguous fields

API reference (JavaDoc)